| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1084 |
|---|
| Symbol | |
|---|
| ID | 4956367 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 1154068 |
|---|
| End bp | 1155765 |
|---|
| Gene Length | 1698 bp |
|---|
| Protein Length | 565 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640180254 |
|---|
| Product | DNA repair protein RecN |
|---|
| Protein accession | YP_001112444 |
|---|
| Protein GI | 134298948 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0497] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00634] DNA repair protein RecN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000955113 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTGCAAT CATTGTACAT CAAAAATTTT GCTTTAATTG ACGATGTTGA GGTTGATTTT
TCTGATGGCT TAAACGTCGT TACCGGGGAA ACTGGTGCCG GTAAGTCGAT GCTGATTGAT
GCCCTGCAGG TTGCCTTAGG AGGACGGGCT TCAGTAGAAT TTATCCGTTC CGGTAGAGAT
AAGGCAACGG TCCAAGCTAC CTTTGATATT TCTCACTTAT CCTGGCTGAA AAAAAAATTA
GAGGAGTCGG GAATTGATTA TGACGAAGAT CATCTCCTGA TTCTCTCCCG GGAATTAAAT
CGCAGTGGAA AAAATACCTG CCGTATCAAT GGTCGGCCGA TTAATCTAGG AATCTATAGA
GAAATGGGTA GTGGCTTAAT TGATATGTTG GGTCAGTACG AGCAACAATC ACTTTTGAAC
CAGGAAAAGC ATCGGTGGCT TTTGGACAGA TTGGGGGGCC AGGAGGTACT CAATCAGGTT
GTTAAAGTAA AAGGAATTTA TACCCAGTGG AAACATACAA CTGCACAACT GAACGAAATT
GAAACCAATG CCAGGGAAAA TGCTCGAAGG TTTGAAATGT TGACTTTTCA GGCGAAAGAA
ATAGCCCGGG CAGATCTGGC AGAGGATGAG GAAGAGGAGC TTCTCAGTGA ACGGCGTTTG
TTGGTTAACG CTGAGAAGAT CACCCGTTTA GCAGGGGAGG TCTATGATTA TCTTTATGGG
GGAGAAACTA ATGTAACTCC TGCTGTGGAC ACTGTTGGTA AAGCCACTGG TGCACTTGAG
GAACTGGCTG AAATAGATAA CAACCTGGTT AGTCTGATAG AGGCTTTAAA GACGGCACTT
TATCAGTTGG AGGATGTGGC AAGGGAAATA TCCTCCTACC GTGATCAAGT GGAATACAAT
CCCGAGCGTT TGGATCAAAT TGAGAACAGA CTCAATCTAA TTAAACAATT AAAATATAAA
TACGGTTCTA GCATTAAGGA AATACTAGAT TACAAAGAAG CTACTCTTTT AGAAATTGAT
AAATTATCCA ATAGTTCCCA ACAGGCAGAT GATTTGAAAG AAAGTATTAA AGGCTTGGAA
AAACAATGGA TTCAACAGGC AAAGGATCTC ACAGAGCTAC GGCAAAGGGC TGCGAAGCAG
TTGGAAGAAG ACGTCGCCAG GGAATTGAAA TATCTGGAGA TAGGTGCCAT GGATTTCAAG
GTAGGCATGA ACCCCAAAAC GGGTGTTTCT TCACAAGGGC TGGAGGAGAT AGAGTTTCTT
ATTGCCCCGA ATCCCGGTGA ACCACTGAGA CCCTTACAAA GGATTGCTTC AGGAGGCGAG
CTCTCACGAA TTATGTTAGC ATTAAAAGTC CTTTTATCCG GGGTTGATGA AGTACCTACT
TTAATTTTTG ATGAAATAGA TACAGGTGTG GGCGGCAAAG CTTTGCAGGC TATTGGCGAG
AAATTAGCCC TGATTGGGCA AACCAGGCAG GTTATCTGTG TTACCCATGG AGCCCAGGTA
GCATGTTTTG CAGATACTCA TTATTTAATT AGTAAATCAG TTGTTGATGG ACATACCAAG
ACAACTGTAG AGAAATTAAA TCAATCGGGA AGAGTAGAAG AATTAGCAAG AATGTTGGCT
GGTCGTGAAA TAACAGATAT TGTGAAGGAT CATGCATTAC AGATGCTAAA GATGTCAACA
AACTGTACTA AAAATTGA
|
|---|
| Protein sequence | MLQSLYIKNF ALIDDVEVDF SDGLNVVTGE TGAGKSMLID ALQVALGGRA SVEFIRSGRD
KATVQATFDI SHLSWLKKKL EESGIDYDED HLLILSRELN RSGKNTCRIN GRPINLGIYR
EMGSGLIDML GQYEQQSLLN QEKHRWLLDR LGGQEVLNQV VKVKGIYTQW KHTTAQLNEI
ETNARENARR FEMLTFQAKE IARADLAEDE EEELLSERRL LVNAEKITRL AGEVYDYLYG
GETNVTPAVD TVGKATGALE ELAEIDNNLV SLIEALKTAL YQLEDVAREI SSYRDQVEYN
PERLDQIENR LNLIKQLKYK YGSSIKEILD YKEATLLEID KLSNSSQQAD DLKESIKGLE
KQWIQQAKDL TELRQRAAKQ LEEDVARELK YLEIGAMDFK VGMNPKTGVS SQGLEEIEFL
IAPNPGEPLR PLQRIASGGE LSRIMLALKV LLSGVDEVPT LIFDEIDTGV GGKALQAIGE
KLALIGQTRQ VICVTHGAQV ACFADTHYLI SKSVVDGHTK TTVEKLNQSG RVEELARMLA
GREITDIVKD HALQMLKMST NCTKN
|
|---|
| |