| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_1078 |
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| Symbol | |
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| ID | 4955986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | + |
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| Start bp | 1148880 |
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| End bp | 1150787 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640180248 |
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| Product | deoxyxylulose-5-phosphate synthase |
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| Protein accession | YP_001112438 |
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| Protein GI | 134298942 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0303047 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGAGCATA TTACCTCAAT ATTAAAAAAC ATTGCTAGTC CAAAGGATCT AAAAAATTTA
AGTTTAAAAC AATTGCAAAG TTTAGCTTTA GAAATTAGGG AAACTATTAT TAAAACTGTA
TCCAAAACGG GCGGTCATCT CGCCCCGAAC CTGGGAGTTG TAGAACTGAC CATTGCTTTA
CACTGTGTTT TTGATACTTC TGTAGATCGT ATTATTTGGG ATGTAGGACA CCAAAGCTAT
GTTCATAAGC TGCTTACCGG ACGACTGGCG CAGTTTTCGA CCCTGCGACA GTATGGAGGC
CTCAGTGGGT TTCCCAAACC CGAAGAAAGC ATTCATGACG CCTTTGCCAC AGGGCATAGT
AGTACATCTA TCTCCGCAGC CCTGGGAATG GCGTTAACTC GAGATTTAAA AGGCGAGAAG
CATTCTGTTG TAGCGGTTAT AGGTGATGGT TCTCTGACAG GTGGTATGGC CTTTGAGGCT
CTGAATTATG CTGGTCACCT GAAGACCAAT ATGATTGTGG TTTTAAATGA TAATGAAATG
TCCATTGCAC CCAATGTAGG TGCTTTATCC GGTTACTTGA GCCGATTAAG GACGGACCCT
AAATATTCTA AGGGTAAGGA TGAGATTGCG GATCTGTTAC AAAAAATTCC CCATGGTCCC
AAACTTCTTA AAGTGGTGGA TCGGTTAAAA GATAGTGTAA AATACCTAGT GGTACCGGGG
ATGCTGTTTG AAGAACTAGG TTTTACCTAC TTGGGTCCGG TGGATGGTCA TGATACCAAG
GCTGTGTTGA CCATGTTGCA GCAGGCTAAG GCTGTCAGTG GCCCTGTTTT AGTACATGTT
ATAACCAAGA AAGGAAAAGG TTATCTTCCG GCGGAACAAA ATCCGGACCG TTATCATGGA
GTTGGTCCCT TCGACCTAGA AACCGGTACG GTGGTGAAAT CCCAGGGACC ACCTAGCTAT
ACAGAAGTCT TTGGTGAAAC CATTGTTAAA TTAGCCAAAG AAGATGATCG AATTATTGGT
ATTACTGCAG CCATGCCTAG TGGGACAGGC CTGAATTCCT TTGCTAAAGA GTTTCCCAAA
AGGTATTTTG ATGTAGGTAT TGCAGAGCAG CATGCCGTAA CTATGGCCGC AGGAATGGCA
GCAACAGGTT ACCGCCCCAT AGCTGCTATC TATTCAACTT TTTTGCAAAG GGCCTATGAT
CAGGTTTTAC ATGATGTATG CATGCAAAAT TTACCAGTTA CCTTTGCCCT GGATCGAGGC
GGACTGGTGG GAGACGACGG ACCTACGCAC CATGGTGTTT TTGATATATC CTTTTTAAGA
AACATCCCTA ACCTAGTTAT GATGTCGCCA AAGGATGAAA ATGAGTTACA ACATATGTTG
AAGACGGCAG TAACCTATAA CGGACCCGTG GCAATCAGAT ACCCCAGGGG TAATGGCATT
GGGATTTCCA TGGATGAAAA ACTTCAATGT TTGCCCATAG GGAAAGGCGA AGTGATAAGA
GAGGGAAACG ATGTTCTGCT ACTTGCCATC GGCAACATGG TACAGGAAGC ACTCAAGGCT
GCTGAGAGTT TAAGTGCCCA AGGCATTGAG GCTACTGTAA TCAATGCCCG ATATACAAAA
CCATTGGATG AAGAGCTTAT CTTAAACTAT GCTGGCAGAA TTAAGAACAT CGTAACCATT
GAGGAGCACG TACTGGCAGG GGGCTTTGGT AGTTCGATTC TTGAACTGTT TGAATCCTCT
GGCCTGACCG ATGTAAAGAT GAAACGGCTG GGTTTGCCTG ATGAATTTAT TGAACATGGA
ACACAAAATC AATTAAGAGC TCAATACGGG TTAACTTCGG CAGGGATTGT CGATACTGTT
TTAAATCATC ATATCCATAA AAATAGAACC CGTAAAGAAT TTTTGTAA
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| Protein sequence | MEHITSILKN IASPKDLKNL SLKQLQSLAL EIRETIIKTV SKTGGHLAPN LGVVELTIAL
HCVFDTSVDR IIWDVGHQSY VHKLLTGRLA QFSTLRQYGG LSGFPKPEES IHDAFATGHS
STSISAALGM ALTRDLKGEK HSVVAVIGDG SLTGGMAFEA LNYAGHLKTN MIVVLNDNEM
SIAPNVGALS GYLSRLRTDP KYSKGKDEIA DLLQKIPHGP KLLKVVDRLK DSVKYLVVPG
MLFEELGFTY LGPVDGHDTK AVLTMLQQAK AVSGPVLVHV ITKKGKGYLP AEQNPDRYHG
VGPFDLETGT VVKSQGPPSY TEVFGETIVK LAKEDDRIIG ITAAMPSGTG LNSFAKEFPK
RYFDVGIAEQ HAVTMAAGMA ATGYRPIAAI YSTFLQRAYD QVLHDVCMQN LPVTFALDRG
GLVGDDGPTH HGVFDISFLR NIPNLVMMSP KDENELQHML KTAVTYNGPV AIRYPRGNGI
GISMDEKLQC LPIGKGEVIR EGNDVLLLAI GNMVQEALKA AESLSAQGIE ATVINARYTK
PLDEELILNY AGRIKNIVTI EEHVLAGGFG SSILELFESS GLTDVKMKRL GLPDEFIEHG
TQNQLRAQYG LTSAGIVDTV LNHHIHKNRT RKEFL
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