Gene Dred_0541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_0541 
Symbol 
ID4957622 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand+ 
Start bp588350 
End bp589342 
Gene Length993 bp 
Protein Length330 aa 
Translation table11 
GC content38% 
IMG OID640179720 
ProductCRISPR-associated Cas1 family protein 
Protein accessionYP_001111910 
Protein GI134298414 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03641] CRISPR-associated endonuclease Cas1, HMARI/TNEAP subtype 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAAA CGATCTACAT TTTTTCAGAT GGAGAGCTTC ACCGAAAAGA TAATACCCTT 
TGTTTTGAAA AAGAAAAAGA AAAACGCTAT ATACCGATTG AGGACACCGG TGAAATAATG 
GCCTTTGGGG AAATAAACAT TAACAAGCGT TTGTTAGAGT TTTTATCACA AAAGGAAATC 
TTACTACACT ATTTTAACCA TTACGGTTAC TACATGGGGA CATTTTACCC CCGGGAACAT 
TTGAATTCTG GATTTATGAT CTTAAAGCAA GCGGAGCATT ACATGGATCA AACCTTACGA 
CTGAAGATTG CCATTGAGTA TATTAGAGGG GGAGGCAAAA ATATCCGCCA GGTGCTCAAG 
TACTACCAGG GCAGGGGAAG GTATGTGGGA GACAAACTAG AGGCAATAGA GAAACTTTTG 
CTAGATATAG ATCAGCAGCA AGATATACCG TCCCTTATGG CGGTGGAGGG AAATATTCGA 
AGCTGGTATT ACAAAGGCTT TGATGATATT ATTTGTGATA CTAATTTTGT TTTCGAGGAA 
CGAAGCAGGC GGCCTCCCAA AAACTTTCTC AATACCTTGA TTAGTTTTGG TAATTCCATA 
ATGTATTCAA TTTGCCTAAG TGAGATATAT AAAACCCACT TAGACCCGCG GATTGGCTAC 
CTGCATGCCA CTAATTTTCG GCGATTTTCT TTAAATTTGG ATGTCTCCGA GATATTTAAG 
CCAATTTTAA TAGATAGAAC CATTTTCTCT TTATTGGCGC GTAAAATGAT CACCGCCAAG 
GATTTTGATC GGGATGCAAA CGGGGTTTTG CTAAAGGAAA AAGGAAAAAA GTGTTTTATT 
CATGCTTTGG AAGAAAAGTT AAAAACAACT ATTAACCACC GGGATTTAGG CCGTCCTGTT 
TCCTACCGAA GATTAATTCG CCTTGAACTT TATAAATTAG AAAAACACCT GATGGGGGAA 
AAAACTTATA CACCATTTAT TGCCAGGTGG TAA
 
Protein sequence
MKKTIYIFSD GELHRKDNTL CFEKEKEKRY IPIEDTGEIM AFGEININKR LLEFLSQKEI 
LLHYFNHYGY YMGTFYPREH LNSGFMILKQ AEHYMDQTLR LKIAIEYIRG GGKNIRQVLK 
YYQGRGRYVG DKLEAIEKLL LDIDQQQDIP SLMAVEGNIR SWYYKGFDDI ICDTNFVFEE 
RSRRPPKNFL NTLISFGNSI MYSICLSEIY KTHLDPRIGY LHATNFRRFS LNLDVSEIFK 
PILIDRTIFS LLARKMITAK DFDRDANGVL LKEKGKKCFI HALEEKLKTT INHRDLGRPV 
SYRRLIRLEL YKLEKHLMGE KTYTPFIARW