| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_0175 |
|---|
| Symbol | lysS |
|---|
| ID | 4955791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfotomaculum reducens MI-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009253 |
|---|
| Strand | + |
|---|
| Start bp | 182675 |
|---|
| End bp | 184207 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640179328 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_001111549 |
|---|
| Protein GI | 134298053 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000127982 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAGATG TAAACGAAAA TAATTTAGTA CAACCGTCTT CGGAGACACC GGATGCCGGA
CAAACCATGC TTGAAGATCT TAATGAGCTT ATGAAAGTTC GCAGAGAGAA ACTACAAGAA
CTTATTAACC AAGGCATTCA GCCCTTTGGT GAAAAATTTG AGGTTACTCA TTATACCTTT
GATATCACAG AGCGGTTTGA AGAAATGGAA GGGCAAACCG TTACCATTGC GGGTCGCATT
ACAGCAAAAC GAGTAATGGG TAAAGCTAGT TTTGCCAATA TCCAAGACAG TAGAGGGAAT
ATTCAAGTAT ATGCTAGGTT AAACGATTTG GGAGCAGAGG AATATGCTCG CCTTGAGAAA
CTGGATATCG GTGATATTAT TGGCTGTTAC GGAAAGGTAT TTAGAACTCG TAAAGGTGAA
ATAACCGTAC ATATTGACAG TTATAAATTA TTATCAAAGT CCTTACGACC TCTGCCCGAA
AAATGGCATG GGCTAAAGGA TGTTGACCTA CGCTACCGTC AACGTTACGT AGATCTTATT
GTAAATCCCG AAGTAAAACA AACCTTCATT ACCCGTAGTA GGGTGGTAAG GGGTATCCGC
AACTACTTAG ATCAGAGGGG CTTCCTAGAG GTTGAAACCC CCATGATGCA CCCCATTGCC
GGCGGTGCCA GTGCACGCCC CTTTATTACC CACCATAATA CCCTGGATAT GAATCTCTAC
ATGAGGATTG CCCCAGAGTT ATATCTAAAA AGGTTATTAG TGGGCGGATT TGATAAGGTT
TACGAAATTA ATCGCAACTT TCGCAACGAA GGTATTTCTA CTAGGCATAA TCCTGAATTT
ACTACTATTG AATTATACCA AGCCTATGCT GACTATAATG ATATGATGGA TCTCACAGAA
GATCTTATTT CTCAGGTGGC TCAGGATGTG CTGGGGACCA CTATGGTTGA ATACGAGGGT
GTAGAAATCA GCCTTGCTAA ACCATGGCGA CGGGTTCCTA TGCTAGAAAT TGTCAAAGAA
CATTCAGGAT TAGATTTTTC CCAGTTAAAA GACGCTAAAG AAGCCTTTGA AGCAGCTAAG
GGGTTAGGCC TTGATGTTGA ACCCAGTGCT TCTTGGGGAG ATATTCTTAA TACGGTATTT
GAGGAAAAGG TTGAGGACAA GCTGATTCAA CCAACCTTTG TAATAGATTA CCCTGTAGAC
ATATCACCCC TGGCAAAACG TCAGCAAGAG AACCCAGAAT TGACTTATCG TTTTGAGTTA
TTCATATATG GACGGGAATT AGCCAATGCT TTTTCCGAGC TTAACGATCC TATTGACCAA
AAGGGCAGAT TTATGTCCCA AGTAGAAAAG AGAAATGCAG GGGATGAAGA AGCCCAAATG
TATGACGAAG ATTTCATTCA GGCTCTAGAA TATGGCATGC CACCAGCCGG AGGATTAGGA
ATCGGTATTG ACCGTCTAGT TATGTTATTA ACCAACTCAT CTTCTATTCG TGATGTAATA
TTATTTCCGT TAATGAGACC CAAGGAATCC TAG
|
|---|
| Protein sequence | MTDVNENNLV QPSSETPDAG QTMLEDLNEL MKVRREKLQE LINQGIQPFG EKFEVTHYTF
DITERFEEME GQTVTIAGRI TAKRVMGKAS FANIQDSRGN IQVYARLNDL GAEEYARLEK
LDIGDIIGCY GKVFRTRKGE ITVHIDSYKL LSKSLRPLPE KWHGLKDVDL RYRQRYVDLI
VNPEVKQTFI TRSRVVRGIR NYLDQRGFLE VETPMMHPIA GGASARPFIT HHNTLDMNLY
MRIAPELYLK RLLVGGFDKV YEINRNFRNE GISTRHNPEF TTIELYQAYA DYNDMMDLTE
DLISQVAQDV LGTTMVEYEG VEISLAKPWR RVPMLEIVKE HSGLDFSQLK DAKEAFEAAK
GLGLDVEPSA SWGDILNTVF EEKVEDKLIQ PTFVIDYPVD ISPLAKRQQE NPELTYRFEL
FIYGRELANA FSELNDPIDQ KGRFMSQVEK RNAGDEEAQM YDEDFIQALE YGMPPAGGLG
IGIDRLVMLL TNSSSIRDVI LFPLMRPKES
|
|---|
| |