| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dred_0111 |
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| Symbol | |
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| ID | 4955907 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfotomaculum reducens MI-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009253 |
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| Strand | + |
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| Start bp | 115731 |
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| End bp | 119240 |
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| Gene Length | 3510 bp |
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| Protein Length | 1169 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640179265 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001111486 |
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| Protein GI | 134297990 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00148726 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGGAT TATTACGGCC ACTAGAATCC ACAACTGAAT ATCAACACTT GCTTCAAGGA
TTAGAAAAGG GCTTTAGGCA ACAAATGGTC TTTGGTCTAT CTGGTTCCCA GCGGAGCTAT
TTATTTGCAG GGCTGGCCCA TGGCTGGCAA TCTGTTCTTA TTGTGACGCC GGGAGAGACC
GAAGCGGGCA CCCTGGCGGA TGATTTAGCC ACCCTATTAC CAGAGGTTTC TGTGCAGCCC
TTCCCGGTAT GGCAACTTTT GCCTTATCAA GTATTGGCCC ATAGTAATGA AGTTCTTGCC
CAACGACTAC GGGTGTTGGA GAAACTTTCC ACAGGGAAAC CCACGGTGGT GGTTACTTCT
GTGGATGCTC TCCTGAGAAG ATTAACTCCA CCAGAGGTTT TTCGTTGTGC GAAGGTAAAA
CTGTCTCTGG GACAACAGGT AGACCTGGAA AAATTGCGGT TTGAGCTGGT TGAATTAGGC
TACACAAGGG TAGACCTGGT GGAGGGAAGA GGACAATTTT CCAGCCGAGG TGGAATTTTA
GACATTTACC CCATGTCGGA AGCCTTGCCT GTACGGATTG AATTTTTTGA TGACGAAGTG
GACTCCATTC GTCACTTCGA GGTTGATAAT CAACGTAGTT TAGATAAATT AAAGGAGATC
AACATTTCTC CTTGCAGAGA GTTGGTAGTA ACGCCCGCAG GGTGGCAGCG GTGTGAAGAA
AATTATAGTT TAGAGTTTAA AAATCAACTT AAGAAATTAC AGCGTTCCGG TTCGGTGGAT
GCAGTGCATC AGCTCTCTTC CCAGGGGGCC ATGTTGTTGG AACAAATTCG GCGTAGAGTA
CCCTTTGATG GGATGGAACA ACTTTTGTAT TACTTCTATC CGGAACCGAT TACGCTTTTA
GATTATTTCA CTGCAGCCCC TCTGTTGTTG GTAGATGACC CCATACGTTT TAAAGAAGTG
GCAGAAACCA TTCTAAAAGA GAGAAACGAA ACATATACGG ATTTGTTAGG CAAGGGTAAG
GTTTTGCCCG GTTATTTTAG CAGTTATCTG GAGTGGCGGC AACTGTTGGC CTCCATAGAA
CGCCAGCAGA CCATTTTCTG TTCCTTTTTG CCCAGAAACC CGCAATACCT GAGACCACAA
AACGTTGTGA ATTTTCCAGC CAAGGCTATG CACAGCTTCT TGGGACATGC TGAGGTTTTG
GCTGATGAAA TTCGACATTG GCGCCGCAGG GGCTATGCCA TTACACTACT GGTTTCTTCT
GAAGAAAGGG CAGCCAATTT ACTAAAAACA CTAAAGGATA GCAAAATAGA TGCTTTCCGG
GTTAAACAGT TGGATCAGGA AGTGCGAGAA GGAAATGTCG TTATAACTGT GGGTCAAATG
GCCAATGGTT TTGAACTAAT TTCTGCCCGT CTCGTGGTTA TTACAGATGC AGAAATATTT
GGCCAGCGGA AGAAAGCCCG GAAACAAAGA TCGCGTCCTG ATGCTAAGAT GGAACCCCTG
GCAGATTTGA AGGCGGGGGA TTATGTTGTT CACGTAAACC ATGGTATTGG GCGTTACCTG
GGGGTTATTA CCCTTGATAT TGGAGCGTTG CAAAAGGATT ACCTGCAGCT TCAATACGCT
GGTGAAGATA AACTCTATGT GCCAACAGAT CAAGTGGGTA TGCTGCAGAA ATACCTTGGG
GCCGAATCCG ATCACCCCAA ACTATCCCGT CTGGGAGGCA CTGAATGGTC CAAGGCCAAG
GCAAAGGTCC GGGAAGCGGT AAAAGATATG GCCGATGAAC TCCTGGCTCT CTACGCTTCC
CGCCAGACTG TCAGAGGTCA TGCTTTTTCC AAAGATATGC CCTGGCAGGC AGAGTTTGAG
GCGTTGTTTC CCTATGAAGA AACACCGGAC CAACTACGGG CCATTGGTGA AGTAAAACAG
GACATGGAAA AAGTAAGACC CATGGATCGT CTTCTCTGTG GGGACGTAGG ATACGGAAAA
ACGGAGGTAG CCCTAAGGGC AGCCTTTAAG GCAGTGATGG ATAACAAACA GGTGGCAGTA
CTGGTTCCCA CCACCATTTT AGCCCAGCAG CACTACAACA CCTTTCGGGA ACGCTTTGCC
AATTACCCCA TTCGCATAGA AATGTTATCC CGTTTCCGTA CAGCTAAAGA ACAGCGTCAG
GTATTGGCGG GGCTTGCCAC CGGTGAGGTG GATATTGTTG TGGGTACCCA TCGATTGGTA
CAAAATGATA TTGTATTTAA GGACCTGGGC CTCCTGGTTG TAGACGAAGA ACAACGTTTT
GGAGTAAGCC ATAAGGAACG GCTGAAACAA ATTCGCAAAA ATGTTGATGT TTTAACCCTT
TCTGCCACAC CCATTCCCCG CACCTTGCAT ATGTCTTTGG TGGGGGTGCG GGACACTAGC
CTTTTGGAGA CACCACCTGA GGAACGTTTC CCGGTCCAGA CTTATGTTTT AGAAGAAGAC
CCTGTGTTAA TTCGGGAGGC TATAAAAAGG GAACTTAACC GGGGAGGCCA AGTTTATTTT
GTTCACAATC GGGTCATGGA CCTGGATCGA CTGGCTGGGT GGTTGCAAAA CCTGGTGCCC
GAAGCCCGGA TTGGTATGGC TCACGGTCAA ATGAAGGAAG ATGAACTGGA ACAAATTATG
ATCGAGTTTA TGGATGGAGA ATATGATGTT TTGGTTTGTA CCACCATTGT TGAGACTGGC
CTGGATATAT CCAATGTAAA TACTCTCATT GTTAAGGATG CTGATCATTT TGGGCTTTCA
CAGCTATATC AACTAAGGGG GAGGGTTGGC AGAACCAACC GCTTGGCCTA TGCCTATTTC
CTCTTTAGAA GGGATAAGGT ACTGACGGAG ATTAGTGAAC GAAGGTTATC TGCCATTCGA
GAATTTACTG AATTTGGCTC TGGTTATAAG ATTGCCATGC GAGATCTGGA GATTCGTGGG
GCAGGGAACA TTTTAGGGGC ACAACAGCAC GGGCATATTG CGGAAGTGGG TTTTGATTTG
TATTGCCGTC TGCTGGAAGA GGCTGTGCAG GAGGCCCGGG GGGAAAAGGT TGAAGAGGTG
GTTGAAACCT CGGTGGAAAT ACCGGTGGAG GCCTACGTGC CGGATACCTA TGTGCCGGAT
GGTAACCAAA AGGTCGAACT TTACCGTCGT TTAGCAGCCA TGAGGGATTT AGTGGAGATA
TCCGACCTAG AGGAAGAACT GGTGGACCGT TACGGCGACT TACCCGAAAG TGTTCGTTGC
CTGTTACAGG TAACCAAGCT GAAAATCATG GGTCGTGGAC TGAAGGTTAA AAGTATTAGC
CGCAGCCAGG GGAGTTTTCG GATACTGTTT GTACCAGAGG CCCCTTTAGA TGGTGAGAAA
CTGGTGAGTA TCAGTGAGAA ATACAAGAAC AATGTAAAGT TTCATACCTC CTCCGAAGGT
TTTGAGATAA AGCTGATAAC TAAGGATAAG GGTGATGTTT CCCTTAGAAA ATTAGAACAG
TTGGAGAGTT TTATGGGCCG GCTGAAATAA
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| Protein sequence | MKGLLRPLES TTEYQHLLQG LEKGFRQQMV FGLSGSQRSY LFAGLAHGWQ SVLIVTPGET
EAGTLADDLA TLLPEVSVQP FPVWQLLPYQ VLAHSNEVLA QRLRVLEKLS TGKPTVVVTS
VDALLRRLTP PEVFRCAKVK LSLGQQVDLE KLRFELVELG YTRVDLVEGR GQFSSRGGIL
DIYPMSEALP VRIEFFDDEV DSIRHFEVDN QRSLDKLKEI NISPCRELVV TPAGWQRCEE
NYSLEFKNQL KKLQRSGSVD AVHQLSSQGA MLLEQIRRRV PFDGMEQLLY YFYPEPITLL
DYFTAAPLLL VDDPIRFKEV AETILKERNE TYTDLLGKGK VLPGYFSSYL EWRQLLASIE
RQQTIFCSFL PRNPQYLRPQ NVVNFPAKAM HSFLGHAEVL ADEIRHWRRR GYAITLLVSS
EERAANLLKT LKDSKIDAFR VKQLDQEVRE GNVVITVGQM ANGFELISAR LVVITDAEIF
GQRKKARKQR SRPDAKMEPL ADLKAGDYVV HVNHGIGRYL GVITLDIGAL QKDYLQLQYA
GEDKLYVPTD QVGMLQKYLG AESDHPKLSR LGGTEWSKAK AKVREAVKDM ADELLALYAS
RQTVRGHAFS KDMPWQAEFE ALFPYEETPD QLRAIGEVKQ DMEKVRPMDR LLCGDVGYGK
TEVALRAAFK AVMDNKQVAV LVPTTILAQQ HYNTFRERFA NYPIRIEMLS RFRTAKEQRQ
VLAGLATGEV DIVVGTHRLV QNDIVFKDLG LLVVDEEQRF GVSHKERLKQ IRKNVDVLTL
SATPIPRTLH MSLVGVRDTS LLETPPEERF PVQTYVLEED PVLIREAIKR ELNRGGQVYF
VHNRVMDLDR LAGWLQNLVP EARIGMAHGQ MKEDELEQIM IEFMDGEYDV LVCTTIVETG
LDISNVNTLI VKDADHFGLS QLYQLRGRVG RTNRLAYAYF LFRRDKVLTE ISERRLSAIR
EFTEFGSGYK IAMRDLEIRG AGNILGAQQH GHIAEVGFDL YCRLLEEAVQ EARGEKVEEV
VETSVEIPVE AYVPDTYVPD GNQKVELYRR LAAMRDLVEI SDLEEELVDR YGDLPESVRC
LLQVTKLKIM GRGLKVKSIS RSQGSFRILF VPEAPLDGEK LVSISEKYKN NVKFHTSSEG
FEIKLITKDK GDVSLRKLEQ LESFMGRLK
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