Gene Dred_0097 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDred_0097 
Symbol 
ID4958170 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfotomaculum reducens MI-1 
KingdomBacteria 
Replicon accessionNC_009253 
Strand
Start bp103178 
End bp104395 
Gene Length1218 bp 
Protein Length405 aa 
Translation table11 
GC content46% 
IMG OID640179251 
Productthreonine dehydratase 
Protein accessionYP_001111472 
Protein GI134297976 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1171] Threonine dehydratase 
TIGRFAM ID[TIGR00260] threonine synthase
[TIGR01124] threonine ammonia-lyase, biosynthetic, long form
[TIGR01127] threonine dehydratase, medium form 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACAAGA GCATAGTAAC TTTGCAAAAT ATTTTAGAGG CTAGGGAGCG ACTCAAGGGA 
GTTAGCAGAT TTACACCCTT AGAACCCTCA GAAGCCTTTA GCAAGATGAC AGGAGCAAAC
GTTTTTTTAA AGCTGGAGAA TTTGCAAAAG ACTGGCTCTT TTAAACTACG GGGTGCCTAT
AACAAAGTAG CAGCCCTAGC AAAGGAGGCA GCTAGGGGTG TGGTGGCAGC TTCAGCAGGC
AATCATGCCC AGGGTGTTGC CTTTGCATCC AGCCAAGCGG GTATTCCGGC TACAATAGTT
ATGCCCGAAG GGGCACCCAT TACAAAGGTT GAGAGAACCA AAGCCTATGG CGCTGAAGTA
GTTCTTTCGG GGCAGGGGTA CGACGATGCC TTTCGGAAGG CTCAAGAAGT TCAGCAGGAA
AAGGGCGCTG TTTTTGTACA TGCCTTTGAT GACCCTCTGG TCATTGCAGG ACAGGGAACC
ATTGGTCTGG AAATACTGGA AGAGCTCCCC GATTTAGATG CCGTTGTTGT ACCCATTGGT
GGAGGTGGAT TAATTGCCGG AGTGGCCTGT GCCATCAAAG AACAAAGACC TGGGGTACAG
ATTATTGGTG TGCAGGCTGC GGATGCCCCT TCTATGCTGG AGGCCTGGAA AATTGGTAAA
GTGCAGGAAT TAAAATCTGC GCAAACCATT GCAGACGGTA TCGCTGTACG TCGACCAGGG
GATCTTACCT TTGAGATGGT TCGTAGATAC GTTGATCAAA TTGTTACCGT TGATGATGAA
GAGATTGCCC GGGCCATCTT AATGCTGCTG GAAAGTTCTA AACTAATGGT AGAGGGTGCA
GGCGCAGTGG GCATTGCTGC ATTGCTTCAT AAAAAATGTG ATCTATCTGG TAAAAAGGTT
GCAGTGATCC TTAGTGGAGG CAATATTGAT GTAAATGTTA TGTCAATGAT TATTGAAAGA
GGTCTGATAA AGGCCGGGCG TTATTTAAGA TTTAAGACTA TCCTGACGGA TAGACCGGGA
TCTTTGCAAA AACTGCTGTC TAACCTTGCT CAATCCGGTG CCAATGTAAT ATCAATTGTA
CACGATCGTA TCAAGCCCAA CGTACCCCTT AAACAAGCAG AGGTTGAAAT ATCTTTGGAG
ACAAGAAATG CAGAGCACAT AGCGCAAATT GTCGAATCAT TGGGTAAAAT GGGGTATGAG
TTAGATATAT TGAGATAA
 
Protein sequence
MDKSIVTLQN ILEARERLKG VSRFTPLEPS EAFSKMTGAN VFLKLENLQK TGSFKLRGAY 
NKVAALAKEA ARGVVAASAG NHAQGVAFAS SQAGIPATIV MPEGAPITKV ERTKAYGAEV
VLSGQGYDDA FRKAQEVQQE KGAVFVHAFD DPLVIAGQGT IGLEILEELP DLDAVVVPIG
GGGLIAGVAC AIKEQRPGVQ IIGVQAADAP SMLEAWKIGK VQELKSAQTI ADGIAVRRPG
DLTFEMVRRY VDQIVTVDDE EIARAILMLL ESSKLMVEGA GAVGIAALLH KKCDLSGKKV
AVILSGGNID VNVMSMIIER GLIKAGRYLR FKTILTDRPG SLQKLLSNLA QSGANVISIV
HDRIKPNVPL KQAEVEISLE TRNAEHIAQI VESLGKMGYE LDILR