Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dole_3178 |
Symbol | |
ID | 5696040 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfococcus oleovorans Hxd3 |
Kingdom | Bacteria |
Replicon accession | NC_009943 |
Strand | + |
Start bp | 3802913 |
End bp | 3804649 |
Gene Length | 1737 bp |
Protein Length | 578 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641265797 |
Product | histone deacetylase superfamily protein |
Protein accession | YP_001531058 |
Protein GI | 158523188 |
COG category | [B] Chromatin structure and dynamics [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCAGAA TACGACGCAT ATACGACGAC GCGGCCCCGG CCAACCGGAC AGCCATCGCA ACGGTCCAGC AAATTCTGCG GGACCGGTTC CCCCTGCTCC ACCCCGACGA GGTGGACCAT CTTCTGGAAA AACTGAAAAA CCCGTTAAAA TACCGCTTCC GGTCCATCCT GTTCGTGGCG GATGTCAAGC GGGCCATACG GGGGTTTGCC CTGCTGATGC ACGCGCCGGA CCTGAACTTC TGTTTCCTGG ATTTCATCTC CACGGCCCAG CATCAGGCCG GCCGGGGGCT GGGCAACGCC CTCTACGACA GAATCCGGGA AGAAGCGGCC CGACTGGGGT GCCGGGGCCT TTTTTTTGAA TGTCTCCCTG ACGATCCGGC CCTGTGTACC GATCCCGAAG TTCTCAAACA GAACGCCCGC CGTCTCAAGT TTTACGAAGC CTGGGGGGCA CGGCCCCTTG CCAACACCCG TTATGAAACA CCGGTCCGGA AGAATGATGA CAACCCGCCC TTTCTGGTGA TCGACACCCT GGGCCGGGAC ACCACCTTTG CCAGAAAGGA GACGCGGGCC ATTGTGCGGG CCATTCTGGA ACGCAAGTAC CCGGACGTGT GTGACCGAAA ATATGTCCGC ATGGTGGTCG GCTCCATCAC CGACGACCCG GTACGGCTCC GGCCCTTCCG GTATGCAAAA AAGAAAACTG TTGAGCCGGT GAAAAAAGCC CTGCCCGAAG ACCAGCGCAT CGGCCTTGTC TATAGCGCCA ACCACCAGAT CCACCATGTG CGGGAGCGGG GCTACGTGGA GTCGCCGGTG CGCGTAAAAA GCATTCTCAA GCACCTGGAA CGGTCCGACC TGTTTTCCGT GCTGCCGGTG CGCCACTTTG CCGATGACCA TATCACCGCC GTTCATGACA AACACTTTGT CCGGTATCTT CAGGCCGCCT GCGCATCCGT GCCGGAAAAC GAGTCCATCT ATCCTTACGT GTTTCCCATC CGCAACAGCA CCCGGCCTCC GAAGTCCCTT CCCATGCGGG CCGGGTACTA CTGCATCGAC ACCTTCACCC CGCTGAACCG GAGCGCTTAT GCCGCGGCCC GTCATGCCGT GGACTGCGTG CTGACCGGGG CCGACGACCT GCTGGAGGGC CGATACCTGG CCTATGCATT GGTGCGGCCC CCCGGCCACC ACGCCGAAAC CAGCATGTTC GGGGGGTTCT GCTATTTCAA CTCCGCGGCC ATCGCTGCCC ACTACCTGAG CCGCCACGGC CGGGTGGCGA TTTTGGACAT TGACTATCAC CACGGCAACG GCCAGCAGGA AATCTTTTAC CGACGCGCCG ATATCTTTAC CCTCTCCATT CACGGCCATC CCCGCTTCAC CTACCCCTTT TTCAGCGGAT TTGCCGAGGA GACCGGAGAG GCGGGGGGCA AGGGCTTCAA CCTCAACCTG CCCCTGCCGG AAAACAGCAC CGCCGCTACC TATCTTCAGG CCATAAAACG CGCGTTAAAT CGCCTGCGGG CCTTTGCCCC CCAGTTTGTA GTGGTGGCCC TGGGATTTGA CACGGCCAAG GGGGACCCCA CCGGCACCTG GCCCCTGGAC GCGGCCGACT ATGAAGAGAT CGGCGATTTG ATCGGCAGCC TTCCCCACGC CACTCTTTTT GTGCAGGAAG GGGGATACAA CACCCGAACC CTGGGGAAAA ACGCGGCCCG CTTTTTTGCG GGCATATGGA AAGGATCATT CACATAG
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Protein sequence | MFRIRRIYDD AAPANRTAIA TVQQILRDRF PLLHPDEVDH LLEKLKNPLK YRFRSILFVA DVKRAIRGFA LLMHAPDLNF CFLDFISTAQ HQAGRGLGNA LYDRIREEAA RLGCRGLFFE CLPDDPALCT DPEVLKQNAR RLKFYEAWGA RPLANTRYET PVRKNDDNPP FLVIDTLGRD TTFARKETRA IVRAILERKY PDVCDRKYVR MVVGSITDDP VRLRPFRYAK KKTVEPVKKA LPEDQRIGLV YSANHQIHHV RERGYVESPV RVKSILKHLE RSDLFSVLPV RHFADDHITA VHDKHFVRYL QAACASVPEN ESIYPYVFPI RNSTRPPKSL PMRAGYYCID TFTPLNRSAY AAARHAVDCV LTGADDLLEG RYLAYALVRP PGHHAETSMF GGFCYFNSAA IAAHYLSRHG RVAILDIDYH HGNGQQEIFY RRADIFTLSI HGHPRFTYPF FSGFAEETGE AGGKGFNLNL PLPENSTAAT YLQAIKRALN RLRAFAPQFV VVALGFDTAK GDPTGTWPLD AADYEEIGDL IGSLPHATLF VQEGGYNTRT LGKNAARFFA GIWKGSFT
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