Gene Dole_3003 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_3003 
Symbol 
ID5695862 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand+ 
Start bp3604200 
End bp3604706 
Gene Length507 bp 
Protein Length168 aa 
Translation table11 
GC content62% 
IMG OID641265619 
ProductCMP/dCMP deaminase zinc-binding 
Protein accessionYP_001530883 
Protein GI158523013 
COG category[F] Nucleotide transport and metabolism
[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0590] Cytosine/adenosine deaminases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.160793 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCATC AGCACTTTAT GACCATTGCC CTTAAACAGG CCAGGCAGGC ACTGGACGCG 
GGTGAATTCC CCGTGGGGTG CGTGATTGCC GACGGTAAAA CCGTGGTGGC CACCGGGGCG 
CGGCAGGGCA CCCGGCAAAA CCGGTTCAAC GAAACCGACC ATGCCGAAAT CGTGGCCCTG 
CGCAACCTGG CGACACTGGA CCCGGCCCCG GACCGGGCCG GCCTGGTGCT CTACTCCACA 
CTGGAGCCCT GCCTGATGTG CTTCGGCGCC ATCCTGATTC ACGGGATTTC AAAAATCGTC 
TATGGGTGCG AAGACATGAT GGGCGGGGGC ACCGGCTGCG ACCTGTCTGC CCTGCCCCCG 
CTTTACCGGG AAAAAAGAGT GGAGATTCTT GCCGGTGTGA TGCGCGCCCA GAGCCTGGCC 
CTGTTCAAGG CTTTTTTCCA GTCTCCTGAC CACGCCTACC TGAAAGAGAC CCTGCTGGCG 
CGGCACATTC TTTCCCAGGC AGACTGA
 
Protein sequence
MDHQHFMTIA LKQARQALDA GEFPVGCVIA DGKTVVATGA RQGTRQNRFN ETDHAEIVAL 
RNLATLDPAP DRAGLVLYST LEPCLMCFGA ILIHGISKIV YGCEDMMGGG TGCDLSALPP 
LYREKRVEIL AGVMRAQSLA LFKAFFQSPD HAYLKETLLA RHILSQAD