| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2474 |
|---|
| Symbol | |
|---|
| ID | 5695324 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 3001291 |
|---|
| End bp | 3002256 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641265082 |
|---|
| Product | RNA polymerase sigma 70 family subunit |
|---|
| Protein accession | YP_001530355 |
|---|
| Protein GI | 158522485 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000000632175 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA AATCATCAGC TTCCGCAAAA CCGGCCCGCA AGGCCGGCCC GGCATCAAAA
ACCGCAAAGG CGCTGGTGCC TGTTTCCGGG GCCGGCAAAA GCCTGGTCAA GTACGATCCG
CTGCAGCGTT ACCTGAAAGA GGTCTCAAGG TACAATCTGC TGACCCGGGA GCAGGAGATC
GAGCTGGGCA AACGCGTCCA GGAAGAGGGC GACGAGGAAG CCGCCTATAT TCTGGCCACC
TCCAACCTGC GGCTGGTGGT CAAAATCGCC CTGGAGTTCC AGCGTGTGTG GATGCAGAAC
CTGCTGGACC TCATTCAGGA AGGCAACATC GGCCTGATGC ACGCGGTGCA GAAGTTTGAT
CCCTACAAGA ACGTCAAGTT TTCCTATTAT GCCTCCTTCT GGATCAAAGC CTACATTCTC
AAGTTTGTGA TGGACAACTG GCGCTTGGTC AAAATCGGCA CCACCCAGAA CCAGCGCAAG
CTTTTTTTCA GGCTGAAAAA AGAGAAACAG GCCCTCATCG ACCAGGGATT CGAGCCCCGG
CCGAAACTCC TGGCCGAGCG GCTGGGCGTT CCCCAGAAGG AAGTAATCAA CATGGAGCAG
CGCCTGGACA TGTGGGACCT CTCCCTGGAC GAGCCGGTGA GCCACGATTC AGACACGCAG
AAAGGCGATC TGCTGGACAT TAACAACACC CAGCCCGTCG ACGAGCAGGT AGGAGACAAG
GCCCTGCGGC AGCTGGTGGG GGAGCACCTG GTGGAATTCA AAAAAACACT GACACCCAGG
GAGCGCGATA TATTTAAAAC AAGAATCTAT ACAGACCAGC CCATGACTCT TCAGGATATT
GGCGAGCGTT ACGCGATTTC AAGGGAGCGG GTTCGCCAGC TTGAAGTCAA TATCATCAAG
AAGATGCGGG ATTTTTTCAA GGAAAAGATT CCCGATTTTG ATCAATACAC CACGGATACG
CACTGA
|
|---|
| Protein sequence | MTDKSSASAK PARKAGPASK TAKALVPVSG AGKSLVKYDP LQRYLKEVSR YNLLTREQEI
ELGKRVQEEG DEEAAYILAT SNLRLVVKIA LEFQRVWMQN LLDLIQEGNI GLMHAVQKFD
PYKNVKFSYY ASFWIKAYIL KFVMDNWRLV KIGTTQNQRK LFFRLKKEKQ ALIDQGFEPR
PKLLAERLGV PQKEVINMEQ RLDMWDLSLD EPVSHDSDTQ KGDLLDINNT QPVDEQVGDK
ALRQLVGEHL VEFKKTLTPR ERDIFKTRIY TDQPMTLQDI GERYAISRER VRQLEVNIIK
KMRDFFKEKI PDFDQYTTDT H
|
|---|
| |