| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2417 |
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| Symbol | |
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| ID | 5695265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 2913887 |
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| End bp | 2916175 |
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| Gene Length | 2289 bp |
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| Protein Length | 762 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641265023 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001530298 |
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| Protein GI | 158522428 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGATA CCCATCCCTC CCTGCCGCCG AGGCCCTGGT GGCCATTACT CCTTCTTGTC
ATCATCGCGG CTGCCGCCAT TCTGACCTAT GCCAACTCTC TGACCGCGCC TTTCGTGTTT
GATGATGCCC ATAACATCGT TGAGAATCCT CATGTTCGCA TGGCCGAGCT TTCCCTCGAC
GGCATCATCG ACGCGGTCAC TGTCGGAACC CGGCGGCCGG TGGCCAGCCT CACCTTTGCA
CTCAACTACT ACTTTCACGG TTATGACATA ACCGGCTACC ATCTGGTCAA CATCGCCATC
CACATTCTGA CAGGCTTTCT GATGTTCCTG GTGGTCCGCC ACACACTGGG CCTGATGAAC
CTTGAAAGAC GGGACATGGT TGCCGGGCTT GCAGCCCTTG TGTGGACCGT CCACCCGCTT
CATACCCAGT CGGTGACCTA TGTCGTCCAG CGCATGGCCG CCCTGGCCAC CCTCTTTTTT
CTTTTCGCCC TCTACCTTTA TATAAGGGGC CGGCTCCGGC AAAGGGAAGG CCGCCCCCTT
GGCTCCCTGT TCTTTGTTCT CTGTGGCCTG TCCGGCATTC TGGCCGTGCT CTCCAAGCAG
ATCGCCGCCA CCCTGCCCTT TTTTATCCTG GTCTACGAAT GGTATTTTTT CCAAGACCTG
GACAGGGCGT GGATTAAAAA ACAGGCAAAA TGGATCGGCA GCGCAGTGGT TGTCATTGGC
GCGCTTGCGG CAATATACCT GGGCGCCTCC CCGATAGAAA AAATCATGGC CATGTATAAA
ACCCAGGACT TTACCCTGGG CCAACGGCTT TTAACCGAGC CCCGGGTGAT TTTTCTTTAT
CTTTCCCTGA TTCTTTTCCC CTATCCCGGG CGGCTCAACC TGGATTATGA CTTTCCCGTG
TCTGTCTCGC TGATCGATCC GGTTACCACC CTGGTCTCCA TACTGGGTTT GATCGGCCTG
GTCGCGGCCG CTGTTGTCAC GGCAAAAAGA TACCGGCTGG TCTCCTTTGC CGTTGTCTGG
TTTCTGGGTA ACCTGGCCAT TGAGTCCTCC TTTTTAGGCC TTGCCCTGGT GTTTGAACAC
CGCACCTACC TGCCCTCTGT CCTTGTAATC GCGGCCCTGG CCTGGGCCGC CATTACATAT
ATTCGGCCCC GGCCCCTGGC CATTGGTTTT CTCTGCGCCG TAACCCTCCT CTGGGGATTC
TGGACATACC AGCGTAACGC CATCTGGGCC GACGAAGTAG CCCTGTGGCG GGATGTGACA
GAAAAATCCC CCACCCTGGC CCGGCCCTGG AGCAACCTGG GAATGGCCCT GCAGATAGCG
GGAAACAGCG AGGCGGCGCT TCAGGCCTTT CAAAAGGCTA TTGCCCTTGA TCCGAATCAC
ATGGAGGCCC ACAACAACAG CGGTTTTATA TTAAGGGAGC TGGGCCGTCC CAAAGAGGCC
ATAAAGTTCT TCCGCAGGGC ACTGGAGATC AACCCGGCCT ATGCCGACGC CCACTACAAT
CTCGGCCTGG CCTTTTTTGA CTTAAAAGAC ATGGCCCAGG CCCGCACGGC TTTTGAGCAG
ACCCTTCGGG TCAATCCGCT CTACAGCAAG GCCCACAACA ACCTGGGGGT CATCCTGATG
CAGGAAGGTG ATCACGAGGC TGCTGTCGCC GCCTATCAGC GGGCACTTAA AACCGACCCC
CGTTTTGCCC AGGCCTACAA CAACCTGGGC ATTATCGCCT ATCAGCAGGG CAACCCGGAT
CAGGCGGCCT CGTTCTTTAA AAAAGCCCTG ACCGCGGATC CGGCCTATGC CGGCGCGGCC
AACAACCTGG CCCGGGTGCG GCAAACCATT GAAAAACACG GCCCCGCCAT CACGGAGCTT
AAACAGATGT TGCACAAGAC CCCCAACGAC GTGGATCTCT CCTGTCGCCT GGCCCAGGTT
TACCAGGCTG CCGGCATGCG GTACGGAGCC ATCTCACAAT ACCAAAAGGC CCTGGCTCTG
CAACCCGGCC ATGGACCAAG TCTCAACGCC CTTGGCGTCC TGTACGCCGC CATGGGCCAG
CCGGCAAAGG CTGTTGAGTG TTTTCGAAAG CTGTCGGCCC TGATGCCGGG CAATGCCACG
ATCTATTACA ACCTGGCCTG CCTGTACGCC CGGCAGAACC AGGTGGAACC GGCTGTTGAA
AACCTGAAAA AAGCCCTTGA CGCCGGGTAT GACAACCGGG AACAGATCCG CGCCGACAAG
GACCTTGCGC CCATTCGCGA CACCGAATTT TACAAAACCC GTATCGATTC ACAGGAGCCG
GGCAAATGA
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| Protein sequence | MTDTHPSLPP RPWWPLLLLV IIAAAAILTY ANSLTAPFVF DDAHNIVENP HVRMAELSLD
GIIDAVTVGT RRPVASLTFA LNYYFHGYDI TGYHLVNIAI HILTGFLMFL VVRHTLGLMN
LERRDMVAGL AALVWTVHPL HTQSVTYVVQ RMAALATLFF LFALYLYIRG RLRQREGRPL
GSLFFVLCGL SGILAVLSKQ IAATLPFFIL VYEWYFFQDL DRAWIKKQAK WIGSAVVVIG
ALAAIYLGAS PIEKIMAMYK TQDFTLGQRL LTEPRVIFLY LSLILFPYPG RLNLDYDFPV
SVSLIDPVTT LVSILGLIGL VAAAVVTAKR YRLVSFAVVW FLGNLAIESS FLGLALVFEH
RTYLPSVLVI AALAWAAITY IRPRPLAIGF LCAVTLLWGF WTYQRNAIWA DEVALWRDVT
EKSPTLARPW SNLGMALQIA GNSEAALQAF QKAIALDPNH MEAHNNSGFI LRELGRPKEA
IKFFRRALEI NPAYADAHYN LGLAFFDLKD MAQARTAFEQ TLRVNPLYSK AHNNLGVILM
QEGDHEAAVA AYQRALKTDP RFAQAYNNLG IIAYQQGNPD QAASFFKKAL TADPAYAGAA
NNLARVRQTI EKHGPAITEL KQMLHKTPND VDLSCRLAQV YQAAGMRYGA ISQYQKALAL
QPGHGPSLNA LGVLYAAMGQ PAKAVECFRK LSALMPGNAT IYYNLACLYA RQNQVEPAVE
NLKKALDAGY DNREQIRADK DLAPIRDTEF YKTRIDSQEP GK
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