| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_2043 |
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| Symbol | |
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| ID | 5694886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 2476378 |
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| End bp | 2482473 |
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| Gene Length | 6096 bp |
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| Protein Length | 2031 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641264644 |
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| Product | parallel beta-helix repeat-containing protein |
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| Protein accession | YP_001529924 |
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| Protein GI | 158522054 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCGAAATA CGACATCCAG AACAATCGGC GTGGTTTTCT TTCTGCTGGT CCTGTTGCTG
GGGACCACAT TCTCTTTTGC GGGCGTAACC TATTATACTT ATGACGACCG GGGACGGGTG
GTAAAAGCAG AGTATGACGA GGGGTTTGCC GTCTATTATG CCTATGACGC CGCCGGCAAC
CGCCTGTTGA TGGAAAATTT TTTCGACGCC GACCTGGACG GTCTGTCCGA CTCCCTGGAG
AGTGCCGGCT GCACCGATCC CAATGACGCG GACACCGATG ATGACGGCAT TGTCGATGGT
ATTGAAGACG CCAACCGAAA CGGCGTGGTG GACCCCGGAG AAACCGATCC CTGCAACCCG
GACACCGACG GCGACGGCAT ACAGGACGGC TCTGAACAGG GCTACACCCT GGATGACATT
CATCCGGACA CTGACACCAA TGTATTTCAA CCCGATCTGG ATTCTTCCAC TACCACCGAT
CCGCTGAACA GCGACACGGA CAATGACAGG ATTTCGGACG GAAACGAGGA CGCCAACCAC
AACGGCAGAA TCGATGCCGG CGAATTGGAC CCCAACAACC CGTGCACCAC CGTTTCTTCT
GACGACTCGC TTCAGGACAA AATCAATGCC GCATCGGACG GCGATGAGCT GGTTGTGGCC
GATGGCACTT ATGGGAGTGT CAGCTTCAAC GGTAAAAAAA TCGTGGTCCG GTCGTTGAAC
GGCCCTGAAA ACTGCTTCAT CGACGGGCAG GAGACCACCC GGGCCGTTGT GTTCAACTCC
GGCGAGGATG AGCAGACCAT TCTTTCAGGC TTTACCATTA CCGGCGGTCT GGCAGCTGGA
GAGGGGGGCG GTATCCTGTG CGACGGGGCG TCACCGATTA TTTACAACTG TATCATTCAG
GATTGCCAGG CGACTAACGG CGGCGGCATG GCCGCGATCA ACGGGGCCGC ACCAACGGTG
ATCGAGTGCC GGATCGAAAG CAACACGGCG TCGGGTTATG GCGGCGGCAT CTACTGCGCC
GACGCGTCGG GCCCGGGCAT GGCCTTGGAT GGATGTACCC TGATGGACAA CTTCGCGGCA
AAGGGTGGCG GCGTATACCA TACCGCGGCC GCGGCCGGTA CGCTGCTTCT GTCCAACTGT
GTGATCGCCA AAAACAGCAG CACGTATGCC GTGGCCGACA CCGCCTATGC GGGATCCGGC
GTGCATGACG ACGTTGCCGC GGCCCTGACC ACAATTATCA ACTGCACCAT TGCCGACAAC
ACCGGCGCCA GGGGAACGGC ATACGATTAC GCGGCGTATC TGAACGGCGG CACCGATATT
CTCAGGAACA CCATCCTGTG GAGCGGTGTT TCAACGACGC ATCACCTGTA CGGCCCTGCG
GCGGCCAATG TTTCCTATTG TCTTATCCAG GGTGGCGGAT ATGCCGCCAG CCCGGCGGTA
TTGAACACGG ATCCGCTGTT TGTGAACGCG GCCGAAGACG ATTACCATCT GCAGGAGACA
TCTCCGTGCA TCGACGCGGG CACGGCCACA AGCGCGCCTC TTTTTGATAT AGACGGTGAT
GACCGGCCCA TGGGCTGGTA CGACATGGGC GCGGATGAAA GCCCCGTGAC AAGGGGCACG
GTGATTCAGC AGCTTATCGA TCAGGCGGCG CCGGGAAGCA CGGTGGTTGT CCCCGATGGG
ACCTATGTTC TGAACGGGGC CGGCAACATC GAACTGAGGG GCAAAAACAT CACGTTGCGG
TCCGAAAGCA ACGATCCGTC GCGGTGCATT ATTGACCTGG GCGAGTTGAC CGGCGGGTTC
TACATTCACC AGGGTGAGGG CCATGATACG GTAATTTCCG GCTTTACCAT TCAAAACGGG
GCCACCGGCG GCAGCGGCGG CGGGATCCTG TGCGACGGCG CCTCGCCGAC CATCACGAAC
TGTGTTATCA GGGACTGCGA CGCAGTCTAC GGCGGGGCCA TTGCGACAAT CAACGGTGCG
GCACCGGTGG TCACCGATTG TGACCTTCTT GACAACACCG CGACCGGCAC CGGCAGCGGC
GGCGGCATTC ACTGCATCAA CGCCTCAGGA ACGGGAATGA GGGTCGAGAC ATGCGTCATC
AGGGGCAACA GCGGCTATTA CGGCGGTGGC GTTACCCATG CGGGAACCAG TAAGCTCTCT
TTGATCAACT GTCTGATCGC GGAAAACGTC AGTCGGTACA GCGCCGGCAA CACCACGCGC
ATCGGCTCCG GCGTGTATGA CCCCAACGAG GATGCTTTAA CCTCCCTTCT CAACTGCACG
GTCACGGCCA ATCACGGCAG CAGGACCGGG TCTTACGCCA AATATGATTA TGGCGTATGT
TGTAAGAATG ATTCTGCTGG AATTGATACC ATCAAGAACA GCATTATCTG TGGCAACACC
ACAACACAGG TGTATGCTCT TCCCTATACC ATGGCCAGTT ACAGCCTGAT TCAGATGCAG
GACGGTTACA AAGGTTTTGG CAATATAAAT GCCGACCCGG TGTTTGTGGA TGCGGCCAAC
GGTGATTATC ACCTGGACGA TACATCGCCA TGCATCGACG CAGCCATGGC CACCGGCGCG
CCATTGACCG ACCTGGACGG TGAGGCCCGG CCCGTTGGTC TTTATGATAT CGGCGCCTAT
GAGTCCGGCG TGGACCGGGA TTCCATTCAG CGGGCCATTG CCGAGGCCAT AGACGGTGAT
GTCGTCATTA TCCCGGACGA CACGTATACG CTGGGCGGCA ACATGAACAT CGACCTGATG
GGCAAGGCCA TCACTCTGCG GTCCGCAAGC AACGATCCGG CTCAGTGTAT TCTTGACCTG
GGAGGCCTGG GCAACGGTTT TTATATTTTC CAGGGCGAAG GCAGCGGTAC GGTGATTTCC
GGCTTTACCA TCAGAAACGG ATATACCAGT GGCAACGGCG GTGGAATCCT TTGTAACGGT
GCTTCGCCGA TCATTGAAAA CTGTATTATC GAAAATTGTA CCGCAGGCGC TAACGGCGGC
GGTATTGCAG CGGTGAATGG TGCCCACCCC ATGATTGTCA ATTGTACAAT AGTTGATAAT
AAGGCAAAAG AGAGTGTCGA TTACGGGGGC GGAGGTATCT ACTGTTCCGG CGCTGTAGAC
CCGGGCATGA AGGTTGACGG ATGCACCCTT TTGTACAACA GGGCCTATGA CGGCGGCGGC
GTGTTTCATA CCGGCACCAG CAAACTGTTT TTAACCAACT GCGTGATCGC ACGAAATAGA
AGCACTCATA GTGCCGCCAG CTACCGATCC GGTTCCGGCG TACATGACCG GCTGGGCAGT
AGGAATGCCA AGACCAGCAT TATCAACTGC ACCATCAGCC ATAATACCGG AAGCAGGGGA
CCGACATCCA CGAGAGATTA TGGTGTTCAT CTTTATTCCA GCGGAGCTGT TGTCAAAAAC
AGCATCATCT GGGGGAACAG CACCGACCAG TTGTATAACC CCGAGGCCAA TGATGTTTCG
TACTGCCTGA TCGAGGGCGG CTACAGCACC AGCACCGGCA TTCTGGATGC GGACCCGTTG
TTTGTGGACG GCCCCGGGGA TAATTATCAT CTGCAGGCCA CATCGCCGTG TATCGATTCG
GGTACAGCCA CCGACGCGCC TTCTTTTGAC ATTGACGGCG ATGTAAGGCC CCTGGGCCTG
GGATTTGATA TCGGCGCGGA TGAGGTTGTT CCAACCTGCA CGGTTTACGA GGATGCGGAA
GACGTGGAGA CCTCAGGCTG GGAGATTTAT GATAACGACC CGACCGGCGC CACGGTCGCC
AACGTGGATG AAGGCGAGAC CCGGGCTATT GGTCTTTCCG GCGACGGCAC GGCCAACGGG
TATCGCCTGC GCCTGGCTGA CGGCAGTAAA TGGAACAACA CAGGGCAGTT TCTTGCCCGG
TGGCGCATGA ACTACAACGA ATGGTTCACC GTCTATTTTG ACTGCGACAC CACCGAAGGC
CACCGCTATC TGGCCTACAG CCCGGCCAAT CAGGACAACC TTGGTACCGG AGAATACGTG
CACCACGGCC TGGGCTCGTC TGCCCGCGGC GGTACATGGC AGACCTTTAG CCGTAACCTG
GCCGCTGACC TTAAGGATGC CCAGCCGGGC AACACCCTGC TGGCGGTCAA TGGCTTTTTG
ATCCGGGGCA GTGGCAGGGT AGACGACATC ACCCTGTGGC TGGACACGGA TGAAGACCAC
TTGAGCGACT GGGAAGAAAC AACCGCCTGC GGCACCGACC CGGCGGCCCC CGATTCTGAC
GGTGACGGCC TCATGGATGG TGAGGAAGTC TATTTCTGGA TGACCGACCC CACCAACAGT
GATTCTGACG GAGACGGCAA TGATGACGGG GTAGAGGTGC TTTTGGGCTT TGATCCGGCA
AATCCAGATT CCAATCCTGC TTTCACGGTT TACGAAGATG CGGAAGACGG GGAGACCTCA
GGATGGGGTG TTTACGATAA CGACCCAACC GGCGCCACGG TCGCCAACGT GGATGAAGGC
GAGACCCGGG CCATTGATCT TTCCGGCGAC GGCACGGCCA ACGGGTATCG TCTGCGCCTG
GCCGACGGCA GTAAATGGAA CAACACAGGA CAATTCCTTG CCCGGTGGCG AATAAACTAC
AACGAGTGGT TCACTGTCTA TTTTGACTGC GACACCACCG ATGGCCACCG CTATCTGACT
TACAACCCGG CCAACCAGGA CAACCTGGGC GACGGAGAAT ACGTGCACCA CGGCCTGGGC
TCGTCTGCCC GCGGCGGCAC ATGGCAGACC TTTAGCCGCA ACCTGGCCGC TGACCTTAAG
GACGCCCAGC CGGGCAGCAC CTTGCTGGCG GTCAACGGCT TTTTGATCCG GGGCAGCGGC
AGGGTAGACG ACATCACCCT GTGGCTGGAC ACGGATGAAG ATCACTTAAG CGACTGGGAA
GAAACAACCG CCTGCGGCAC CGACCCGGCG GCTCCCGATT CTGACGGTGA CGGCCTCATG
GATGGTGAGG AAGTGTATGA CTGGATGACA GACCCCGCCA ACAGCGATTC TGACGGAGAC
GGCACTGATG ACGGGGTAGA GGTGCTTTTG GGCTTTGATC CGGCAAATCC AGATTCCAAT
CCTGTTTTCA CGGTTTATGA AGATGCGGAA GACGGGGAGA CCTCAGGCTG GGGTGTTTAC
GATAACGACC CAACCGGCGC CACGGTCGCC AACGTGGATG AAGGCGAGAC CCGGGCTATT
GATCTTTTCG GAGACGGCAC GGCCAACGGG TATCGCCTGC GCCTGGCCGA CGGCAGTAAA
TGGAACAACC AGACCCAGTT CGTGGCCCAG TGGAACATGT GCTACAGTGA ATGGTTTACT
GTCTATTTTG ACTGCGAAAC CGACTGGGGC CATCGTTATA TTTATTACAA TCCTTCCAGT
AACGATCTGC TGGGAATCGG AGAATATGTC CACTTCGGCC TGGGTCCGGA GGCAAACACC
GGCAACTGGT ATACTTTTAC GCGAAGCCTG GCTGCCGATC TGCATAAGGC CCAGCCCGGC
AACACTCTGC TGGAAGTCAA CGGCTTCCTG ATCCGGGGCA GCGGCAGGGT AGATAATATC
AGGCTGCTGG CAGAGGTGCC GGACCGGATC GTTTACGAAG ACGCCGAAGA CGGTGCAACT
CCTGGCTGGG CCGTTTATGA CAACGATCCC GCCGGCGCCG CTATCCTGAA TGTTGACGAC
AACGGTGATC GGGTCATTCA GTTTGCCGGA GACGGCACAG CCAACGGGTA TCGTCTGCGA
ACGCTGGGTG GTGGTACCAA ATGGCAAAAC ACCACCCATT TTATCGCCCG GTGGGACATG
AACTACAATG AATGGTTTAC CGTCTATTTT GACTGTGAAA CCACCGGCGG GCACCGGTAT
CTTACCTACA ACCCGGCCAG CAATGATAAC CTGGGCACCG GAGAATATGT GTACCACGGC
CTGGGATCGT CTGCCTGTGA CGGCACATGG CAAACCTTTA TGCGGGACCT GGAGGCGGAT
CTTAATGAGG CCCAGCCGGA TAACAGCCTG CTGGAGGTCA ATGGCTTCCT GATCCGGGGC
AGCGGGATGG TGGATGATAT TTCATTGAAC CGGTAA
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| Protein sequence | MRNTTSRTIG VVFFLLVLLL GTTFSFAGVT YYTYDDRGRV VKAEYDEGFA VYYAYDAAGN
RLLMENFFDA DLDGLSDSLE SAGCTDPNDA DTDDDGIVDG IEDANRNGVV DPGETDPCNP
DTDGDGIQDG SEQGYTLDDI HPDTDTNVFQ PDLDSSTTTD PLNSDTDNDR ISDGNEDANH
NGRIDAGELD PNNPCTTVSS DDSLQDKINA ASDGDELVVA DGTYGSVSFN GKKIVVRSLN
GPENCFIDGQ ETTRAVVFNS GEDEQTILSG FTITGGLAAG EGGGILCDGA SPIIYNCIIQ
DCQATNGGGM AAINGAAPTV IECRIESNTA SGYGGGIYCA DASGPGMALD GCTLMDNFAA
KGGGVYHTAA AAGTLLLSNC VIAKNSSTYA VADTAYAGSG VHDDVAAALT TIINCTIADN
TGARGTAYDY AAYLNGGTDI LRNTILWSGV STTHHLYGPA AANVSYCLIQ GGGYAASPAV
LNTDPLFVNA AEDDYHLQET SPCIDAGTAT SAPLFDIDGD DRPMGWYDMG ADESPVTRGT
VIQQLIDQAA PGSTVVVPDG TYVLNGAGNI ELRGKNITLR SESNDPSRCI IDLGELTGGF
YIHQGEGHDT VISGFTIQNG ATGGSGGGIL CDGASPTITN CVIRDCDAVY GGAIATINGA
APVVTDCDLL DNTATGTGSG GGIHCINASG TGMRVETCVI RGNSGYYGGG VTHAGTSKLS
LINCLIAENV SRYSAGNTTR IGSGVYDPNE DALTSLLNCT VTANHGSRTG SYAKYDYGVC
CKNDSAGIDT IKNSIICGNT TTQVYALPYT MASYSLIQMQ DGYKGFGNIN ADPVFVDAAN
GDYHLDDTSP CIDAAMATGA PLTDLDGEAR PVGLYDIGAY ESGVDRDSIQ RAIAEAIDGD
VVIIPDDTYT LGGNMNIDLM GKAITLRSAS NDPAQCILDL GGLGNGFYIF QGEGSGTVIS
GFTIRNGYTS GNGGGILCNG ASPIIENCII ENCTAGANGG GIAAVNGAHP MIVNCTIVDN
KAKESVDYGG GGIYCSGAVD PGMKVDGCTL LYNRAYDGGG VFHTGTSKLF LTNCVIARNR
STHSAASYRS GSGVHDRLGS RNAKTSIINC TISHNTGSRG PTSTRDYGVH LYSSGAVVKN
SIIWGNSTDQ LYNPEANDVS YCLIEGGYST STGILDADPL FVDGPGDNYH LQATSPCIDS
GTATDAPSFD IDGDVRPLGL GFDIGADEVV PTCTVYEDAE DVETSGWEIY DNDPTGATVA
NVDEGETRAI GLSGDGTANG YRLRLADGSK WNNTGQFLAR WRMNYNEWFT VYFDCDTTEG
HRYLAYSPAN QDNLGTGEYV HHGLGSSARG GTWQTFSRNL AADLKDAQPG NTLLAVNGFL
IRGSGRVDDI TLWLDTDEDH LSDWEETTAC GTDPAAPDSD GDGLMDGEEV YFWMTDPTNS
DSDGDGNDDG VEVLLGFDPA NPDSNPAFTV YEDAEDGETS GWGVYDNDPT GATVANVDEG
ETRAIDLSGD GTANGYRLRL ADGSKWNNTG QFLARWRINY NEWFTVYFDC DTTDGHRYLT
YNPANQDNLG DGEYVHHGLG SSARGGTWQT FSRNLAADLK DAQPGSTLLA VNGFLIRGSG
RVDDITLWLD TDEDHLSDWE ETTACGTDPA APDSDGDGLM DGEEVYDWMT DPANSDSDGD
GTDDGVEVLL GFDPANPDSN PVFTVYEDAE DGETSGWGVY DNDPTGATVA NVDEGETRAI
DLFGDGTANG YRLRLADGSK WNNQTQFVAQ WNMCYSEWFT VYFDCETDWG HRYIYYNPSS
NDLLGIGEYV HFGLGPEANT GNWYTFTRSL AADLHKAQPG NTLLEVNGFL IRGSGRVDNI
RLLAEVPDRI VYEDAEDGAT PGWAVYDNDP AGAAILNVDD NGDRVIQFAG DGTANGYRLR
TLGGGTKWQN TTHFIARWDM NYNEWFTVYF DCETTGGHRY LTYNPASNDN LGTGEYVYHG
LGSSACDGTW QTFMRDLEAD LNEAQPDNSL LEVNGFLIRG SGMVDDISLN R
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