| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1899 |
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| Symbol | |
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| ID | 5694739 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 2302880 |
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| End bp | 2304151 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641264497 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001529780 |
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| Protein GI | 158521910 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.126482 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTGATCC CCAACCTGGG CTTTGTCACC ATCAGCGACT ACACATGGAA CCGGCCGGCT
GCCATTACCC TGCCAGGCGG GGCCACCCGT GAGTTTGAAT ACGATCCCCT GATGCGGGTA
AAAGAGATCA CCTCTCTTGA CCCGGGCGGC AATGCCCTGT TAAATTACAC CTACGCCCAT
GACGCCATGG ACAACATCAC GGCCAAGCAG ACCGAGCACG GGGATTATGG GTATGGATAT
GACGATCTGC ACCGGCTGGC TACGGTTGAC AACCCGGCCG CGGGCCTGGC CGACGAGGCC
TTTACCTATG ACAGCGTGGG CAACCGCCTG ACCTCGGCCC AGGCGGCAGG AGACTGGACA
TACAATGACA ACAACGAATT GTTGTCATCC GTTGGAGTGA CCGGGGGATC CACATACGAG
TACGACGCCA ACGGCAATAC CATTAAAAAG ACAGTGGGCG GCGTTGTCAC CAGTTATGTA
TACAACACGG AAGACCGGCT GACCCAGGTC TGGAGCGGCC TGCCCGGTTC CGGTTCTTTG
ACAGCCACGT ACTATTATGA CCCGTTTGGC CGCAGGCTGT GGAAGGGGGT CGGGGGAACA
CGGACGTACT TCCATTACAG TGATGAGGGC CTCGTCGCGG AAATCAATGC CTCCGGAACC
GTGGTCAAGT CCTACGGCTG GCAGCCCGGC GGCACCTGGG GCACCGATCC GCTGTTCATG
AAGGTTAGTG GGAATTATTA CTTCTACCAC AATGACCACC TCGGTACCCC TCAGAAGCTG
ACGGCCAGTA ACGGGGCGGT GGTTTGGAGT GCTAAGTACG AGAGCTTTGG GGATGCGACT
GTTGAGATCG AGACGGTTGA GAATAACCTC AGGTTCCCGG GCCAATACTT TGATGGGGAG
AGTGGGCTGC ATTATAACCT GCATCGTTAT TATGCTCCTG AGCTAGGACG GTTCTTGAAA
GATGATCCAA TCGGACTTCG GGGTGGGATT AATCAATATA TTTATGCAGA TAACAATGTG
AGTAATAATA CTGATCCTTA CGGATTGTTT TCAAAAAAGA CTAAATGCCA GATAGCTTGT
AATGTGGCAT TAGGCTATAC TTGTACTGTT TTAGGTATTG GATCAGGCAT AGTCTCCGGG
CCATTAGTTG GAATTGGTGT TGGGGTTGTA TGCAGGGTAG TTTCATTTGG TATATGCTAT
GCAACTTGTT CAGGGGCACC AGATGATTGC TCAGACTTTC CACCGGGAGA CTATTCTTTT
TCTTATGCCT AA
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| Protein sequence | MLIPNLGFVT ISDYTWNRPA AITLPGGATR EFEYDPLMRV KEITSLDPGG NALLNYTYAH
DAMDNITAKQ TEHGDYGYGY DDLHRLATVD NPAAGLADEA FTYDSVGNRL TSAQAAGDWT
YNDNNELLSS VGVTGGSTYE YDANGNTIKK TVGGVVTSYV YNTEDRLTQV WSGLPGSGSL
TATYYYDPFG RRLWKGVGGT RTYFHYSDEG LVAEINASGT VVKSYGWQPG GTWGTDPLFM
KVSGNYYFYH NDHLGTPQKL TASNGAVVWS AKYESFGDAT VEIETVENNL RFPGQYFDGE
SGLHYNLHRY YAPELGRFLK DDPIGLRGGI NQYIYADNNV SNNTDPYGLF SKKTKCQIAC
NVALGYTCTV LGIGSGIVSG PLVGIGVGVV CRVVSFGICY ATCSGAPDDC SDFPPGDYSF
SYA
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