| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1678 |
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| Symbol | |
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| ID | 5694515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 2007903 |
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| End bp | 2009780 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641264273 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001529559 |
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| Protein GI | 158521689 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0321383 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTGATT CTGCCGCCAC ATCCGAGACC GGTTCAAAAG AGAACCTCCG TCGCATGCGG
GTCCATCCGG TTACGCTCTC TTTTATCAAC GAGTGCGCCG AATATGAAAA ACCCTTCAAC
GACACCTATA TTCAGAAATC CCTGAAACCG CTTCGTATTG CCATTGTCCT GGCTGTCATT
ACATGGAGTT CCTTCGGTCT TCTTGACCTC TTCATTGAAC ACTCCCAGTA CCTGAGCATG
TGGAAAATCC GGTACGGTAT TCTGATTCCC AGTTTTATTC TGGGATATTT TTTTTCCTAC
ACAACATTTT TTGAAAAATA TTTTCAGCCC ATCGTCGCGA TGTACGCTGT TGCCGCCGGC
CTGGGCGTCA CCCTGATGAT CCCGCTTTCC ACTTCCCCCA TGCGGCACAC CTATTACGCC
GGGCTGATCA TGGTGCTCCT GTTTGCCTAC ACCATCCTGC GATTGCGGTT TTTGTGGGCC
AGCATGGCCT GCTGGCTGGT GTTTGTGGCC TACGAAATCA CAGCCCTTGC CATCAACACA
CCCGCCGATG TCCTGATCAG TAACAACTTT TTTTTCGTCA ATGCCAACAT CATCGGCATG
TTTGCCTGCT ACTACATTGA ACTCTCCCAC CGAAGGGACT TTTTTCTGGC CCGGCAGCTG
GAGCAGGAAA AACAGAAGGT CAGCACCATC AACTATGAGC TGGAAGAAAA TGTGCGCAAG
CGCACCCTTC AGATGATCAA GATCAATGAA GACCTCAACC TGACCGTAAA CGACTACAAG
CGGGCCCAGG AAAGCCTGAA GAAGAGCGAA GAAAAATACC GCACCATCAT CACCAACATG
GAGGAGGGCT ACTACGAACT GGACCTGGAA GGAAACTTTA CCTTCTGCAA CGATTCGGCC
TTAAAAATCT TTCGGCACAA TCCGGAAAAC ACCCTGGTCG GCAACAACAT GCGCGCCTAC
ATGACCCGGG AACACGCGGA GCAGGCATTG CGGGCCTTTA ACGAGATATA CCAGACCAAC
ATTCCTGAAA AGGCCATGAA CTGGGAGATT CAGACACCGG ATGGCGCCAC CTGTTTCCTG
GAAGTGTCAG CAACGCGCAT CAATGCCGCC GATGGCCGGG CCCAGGGCTT CCGCGGCATC
ATTCGGGATA TCACCGAACG CAAGAAAATG GAAAAAAAGC TCCTTGAGTA TTACGAGAAC
ATCAAGGAGA CCCGCACCAT GACCATCCTG GGGCTTGCCA AACTGGCCGA ATACCGGGAC
CTGAATACCG GCGAGCACCT TGAACGCATG ATGGAGTATA CCCGGATACT GACCCAGACC
CTGGCCGAAC ATCCCAAGTA CCGATCTTAT ATTACCAGTG AATATATCGA AGACATTTAT
ATCTCCTCGA TCCTTCACGA TATCGGCAAG GTCGGTATCA CCGACGAGAT TCTGCTCAAG
CCCGGCAAGC TGACCCCGGA CGAGTTTGAA AGGGTCAAGG AGCACCCGGT GCTGGGCGGC
GATGCCCTGC GGGCCATGGA GTCACGGGTG GAAGGAAAAT CCTTTCTCAC CCTGGGAAAG
GAGATCTGCT ACCACCACCA TGAAAAGTGG GACGGAAGCG GTTATCCCGA CGGTTTGCGC
GGCGAAAACA TTCCCCTGTC CGCCCGCATC GTGGCCCTGG TGGATGTGTA TGACGCCCTG
ACATCCGTTC GTGTTTACAA AGGGGCATCC TCCCATGAAG AGGCGGTGGA AATCATCACC
GCTGAACGGG GCAGCCATTT TGATCCGGAC ATCGTAGACG CCTTCCTGTC CAGGCAGGAT
GTTTTCAAAA AAATCCTCAG GGCCACGCAG GAGGAGACCC GGGACATCAC ACGGGAGCAT
ACGCGGGCGA TAAACTAA
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| Protein sequence | MVDSAATSET GSKENLRRMR VHPVTLSFIN ECAEYEKPFN DTYIQKSLKP LRIAIVLAVI
TWSSFGLLDL FIEHSQYLSM WKIRYGILIP SFILGYFFSY TTFFEKYFQP IVAMYAVAAG
LGVTLMIPLS TSPMRHTYYA GLIMVLLFAY TILRLRFLWA SMACWLVFVA YEITALAINT
PADVLISNNF FFVNANIIGM FACYYIELSH RRDFFLARQL EQEKQKVSTI NYELEENVRK
RTLQMIKINE DLNLTVNDYK RAQESLKKSE EKYRTIITNM EEGYYELDLE GNFTFCNDSA
LKIFRHNPEN TLVGNNMRAY MTREHAEQAL RAFNEIYQTN IPEKAMNWEI QTPDGATCFL
EVSATRINAA DGRAQGFRGI IRDITERKKM EKKLLEYYEN IKETRTMTIL GLAKLAEYRD
LNTGEHLERM MEYTRILTQT LAEHPKYRSY ITSEYIEDIY ISSILHDIGK VGITDEILLK
PGKLTPDEFE RVKEHPVLGG DALRAMESRV EGKSFLTLGK EICYHHHEKW DGSGYPDGLR
GENIPLSARI VALVDVYDAL TSVRVYKGAS SHEEAVEIIT AERGSHFDPD IVDAFLSRQD
VFKKILRATQ EETRDITREH TRAIN
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