Gene Dole_1421 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_1421 
Symbol 
ID5694256 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp1692281 
End bp1693888 
Gene Length1608 bp 
Protein Length535 aa 
Translation table11 
GC content58% 
IMG OID641264014 
Productputative PAS/PAC sensor protein 
Protein accessionYP_001529302 
Protein GI158521432 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0232449 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGCCTG AACCCACGGG GGCCACAGCG GCGGCACAGC GAATACGGAA ACGCCATTTC 
CTGATGAGCG CCGCCTCTTA TCTGATTATC GGCATGCTGC TGGTATACGT TCAGCAGAGC
CACATTCTGG ATATCACCCC GATCCTTCTT TACACTCTTC TGGCAGCGGC CCTGACGGTC
AACATCGCCT TCTACGTGGT CATCTCCACG GGCCTCAATA CCCGGCTCAA CGACCCCAGC
CTCACCCTTG CCCAGGTGAT CACGGCCATT GCCCTGCTCA TGGCCCTGAC CTATGTCGCC
ATCGAACTAA AGGGCCTGAT CCTTACCGGC TACCTGCTCA TCTTTCTTTT TGGCACCTTT
TATCTCCAGG TGCACCAGTT CCTGATACTG ACGATTTTCG CCGCCGCCGG CCACGGCCTG
GTCATCCTGC TGCTGGCCTT TTCCCCCGGC CGGCCGATCC ACCTGCAGAC CGAACTGATG
TACTGGGTGG CCCTGGTAGC CATTCTCCCC TGTTTTGCCG TGCTGTGCGG CGACGTGAGC
CGGCTTCGCA AAAGAAGCTA TGCCACCCAC CGGCAACTGA AAACATCGGA GGCCCGTTAC
CGGGGGCTGC ACGACAACAT GACCGATGCG TCGGTGCTGC TGGACCTCCA GGGCCGCATT
CTAACGGCCA ACGCGGCGTT TCTGGCCATT GTCGGCATTC AGGATGTCCG CAACCTGAGC
CGGTATCCCT TTGTCGACCT GCTCCATCCT GAAGACCGTC TGGCATGGCA GCGACAACTG
GGGGCAGTCG ACCGGGCAGA CCGGACGAGC ATGGCTTACC TGAAAATCAT CGACAGAGAT
GAACAGGTCC GGGAAATGGA ATGCAAAACC AGCTTTGTAG GGGAAGCAGG CGATGTCACC
GGCCTGCTGA TGACCCTGCG GGACATGAGA ATCACCCGAA AGTTGAAAAC ACAGATCGCC
GATTCTTACA AGGAGCTGGA ACAGGCAAAG TCCTTCACCA TCCTGGGGCT GGCCAAGCTC
ACCGAATTCA GGGACAAAAA CACCGGAGAC CACCTGGAAC GAATTCGGGG ATACACCCGG
ATTCTGGCCA CCCAGCTGGC CACCCTGCCC AATTACGCCG ATCATATCAC CGACCGTTAC
ATCAACGATA TCTCCGTATC CTCAGTGCTT CACGATATCG GCAAGGTGGG CATGCCCGAC
ACCATTCTTT TCAAGCCCGG CCCGCTCACC AGCGAGGAAT TTGAAATCAT CAAACAGCAC
GCTCTTCTGG GGGGAGAGGC CATTGAAAAG ACGGAAGGAC TGATTCAGGG GGAGTCATTT
TTAAATCTCG GCAAAATCAT AGCTTACTGT CATCACGAGC GGTGGGACGG CTCCGGCTAT
CCCATGGGGC TGGCCGGGGA GGAGATTCCC CTGGCCGCCA GAATCGTGGC GCTGGCCGAC
GTGTATGACG CCCTGACCAC CCGCCGCGTA TACAAGGACG CCATTCCTCA CGAGGCGGCC
AGGGCCATCA TCGTGGCGGA AAAGGGCCGG CATTTTGACC CTGACGTGGT GGACGCCTTT
TGCGCCTGCG ACGATCAAGT CCGGGACCTG GCGCGAAAGG CGGGCTGA
 
Protein sequence
MMPEPTGATA AAQRIRKRHF LMSAASYLII GMLLVYVQQS HILDITPILL YTLLAAALTV 
NIAFYVVIST GLNTRLNDPS LTLAQVITAI ALLMALTYVA IELKGLILTG YLLIFLFGTF
YLQVHQFLIL TIFAAAGHGL VILLLAFSPG RPIHLQTELM YWVALVAILP CFAVLCGDVS
RLRKRSYATH RQLKTSEARY RGLHDNMTDA SVLLDLQGRI LTANAAFLAI VGIQDVRNLS
RYPFVDLLHP EDRLAWQRQL GAVDRADRTS MAYLKIIDRD EQVREMECKT SFVGEAGDVT
GLLMTLRDMR ITRKLKTQIA DSYKELEQAK SFTILGLAKL TEFRDKNTGD HLERIRGYTR
ILATQLATLP NYADHITDRY INDISVSSVL HDIGKVGMPD TILFKPGPLT SEEFEIIKQH
ALLGGEAIEK TEGLIQGESF LNLGKIIAYC HHERWDGSGY PMGLAGEEIP LAARIVALAD
VYDALTTRRV YKDAIPHEAA RAIIVAEKGR HFDPDVVDAF CACDDQVRDL ARKAG