| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1408 |
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| Symbol | |
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| ID | 5694243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 1674201 |
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| End bp | 1675934 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641264001 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001529289 |
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| Protein GI | 158521419 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02019] bacteriochlorophyll 4-vinyl reductase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.22381 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGAAG CAGGAGAACT GAGCGGCAAA CGCACGCGGA AAAAACTCGG CGAAATGCTG
GTGGACGCCG GCTATCTGAC CGAGGAGCGA CTGACCGGCT ATGTGGCGGC CCAGAAGCGC
TCCGGTTTGA AGTTGGGCCA GTTCCTCATT CGGGAGGGAG TGGTCAGCGA ATCCATGATC
GTGGACCTGG TCTCCCGGCA GGCCGGTATT CAGCGGTTTG ACCCGGCCGA GTTTCCCGTG
ACCATGGAAC TGGCGAAGAG CCTGGCAGAA ACCGTGTCCC GCAAATACGG CGCGGTGCCT
TTGCGGCGGG GCAACCACCT CCTGCTGGTG GCCATGACCG ACCCCCTGGA CATTCGCTCC
CTGGATGCCA TTGAGGACGA GTGCGACCTG GAGGTGGAAC CCGTGATCTG CACGGAACAG
GAGTTCTCCC ACCTGTTTAC CCAGGTTTAC GGAACCCGCA TCGACGGTTT TGCCGGAGAG
GGATACGACC TGACCGAGAC CATGGACTAC GGAGAAGACG AGGAACCGGC AGACGCCGGG
GCCACGGAAA TATCCTCTTT GCAGCACATG GCCGAGGAGG CCCCGGTGGT GCGGCTGGTC
AACGCCCTGC TGGCCCAGGC GGTGCGGCAG GGTGCCAGTG ATATTCACAT CAGCCCGGAA
AAGCGCTACG TCCAGGTGCG GCTGCGTGTC GATGGTGTTC TGCACGAGGT GCCGGCCCCG
CCCAAGACCT TGTTTCTCTC GATTGTCTCC CGGCTCAAGA TTCTGGCCAA CCTGGACATC
TCGGTCTCCA GAATTCCCCA GGACGGCCGC TTTACCGTGA AGATCGAGAA CAAGGAGATC
AACATCCGGG TTTCCACCAT TCCCACCATT TACGGGGAAA ATGTGGTGCT GCGGCTGCTG
GACACCTCCG GCGGCGTCTA CACCCTGGAC CAGCTGGGCA TGGCTTCTGA AGACCAGGAA
AAGCTCAAGC GCAACATTCA GAAACCCTAC GGCATGATCC TGGCCACCGG GCCCACGGGC
AGCGGCAAAA GCACCTCCCT GTTTGCCATG ATCAACCGGA TCAACAAGCC GGACATCAAC
ATCATCACCC TGGAAGACCC GGTGGAGTAT CGTATCGAAA AGATCCGCCA GGCCCAGTTG
AACCGGCGGG CCGGCATGAC CTTTGCCAGC GGCCTGCGCT CCATTTTGCG CCAGGACCCG
GACGTGATTA TGGTGGGCGA AATTCGCGAC GGCGAAACCG CCCAGGTGGC CACCCAGGCG
GCCCTCACCG GCCACATGGT TTTCAGCACC GTTCACACCA ACGACGCGGC CGGCGCCATC
ACCCGGTTTA TCGACATGGG GGTGGAGCCC TTTTTGGTCT CGTCGGTGAT GCTGGTCTCC
ATGGCCCAGC GGCTGGTTCG CAAAGTGTGT GAAGACTGCG CCGAACCCTA CCAGCCGCCT
CATGAAGCGC TGGTCTTCAT GGGCCTGGAA AACGCGAAAA AAGCCACGTT CAAGCGGGGA
AAAGGATGCG CCTACTGCAT GAACACCGGA TACAGAGGCC GCACCGGCAT CTACGAGATT
CTGGAAATTG ATGACGATGT GCGGGAGATG ATCGTGTCTC GGGCCACTTC CCACCAGATC
ACAAGGGCCG CGGTTACTGC CGGCAAGCTT CAGACCCTGA AGCAGGACGC GGCCCGCAAG
GCGGCCCTGG GCATTACCAC TGTTGAGGAG GCGGCCAAGG GTGTTATGGG ATAG
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| Protein sequence | MPEAGELSGK RTRKKLGEML VDAGYLTEER LTGYVAAQKR SGLKLGQFLI REGVVSESMI
VDLVSRQAGI QRFDPAEFPV TMELAKSLAE TVSRKYGAVP LRRGNHLLLV AMTDPLDIRS
LDAIEDECDL EVEPVICTEQ EFSHLFTQVY GTRIDGFAGE GYDLTETMDY GEDEEPADAG
ATEISSLQHM AEEAPVVRLV NALLAQAVRQ GASDIHISPE KRYVQVRLRV DGVLHEVPAP
PKTLFLSIVS RLKILANLDI SVSRIPQDGR FTVKIENKEI NIRVSTIPTI YGENVVLRLL
DTSGGVYTLD QLGMASEDQE KLKRNIQKPY GMILATGPTG SGKSTSLFAM INRINKPDIN
IITLEDPVEY RIEKIRQAQL NRRAGMTFAS GLRSILRQDP DVIMVGEIRD GETAQVATQA
ALTGHMVFST VHTNDAAGAI TRFIDMGVEP FLVSSVMLVS MAQRLVRKVC EDCAEPYQPP
HEALVFMGLE NAKKATFKRG KGCAYCMNTG YRGRTGIYEI LEIDDDVREM IVSRATSHQI
TRAAVTAGKL QTLKQDAARK AALGITTVEE AAKGVMG
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