| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1326 |
|---|
| Symbol | |
|---|
| ID | 5694160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | + |
|---|
| Start bp | 1580200 |
|---|
| End bp | 1581873 |
|---|
| Gene Length | 1674 bp |
|---|
| Protein Length | 557 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641263918 |
|---|
| Product | thiamine pyrophosphate binding domain-containing protein |
|---|
| Protein accession | YP_001529207 |
|---|
| Protein GI | 158521337 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAAAA AGATCACCGG CGGGCATCTG GCGGCAAAAT ACATGAAGCA GATGGAACAG
GTGGATACAA TATTCACCAT TTCCGGGGGC CATATCGAGA ATCTGCTGGA CGGTCTTTCC
GAATACGGTA TTCGTACCAT TGACGTGCGC CATGAGCAGG CAGCGGCCAT GATGGCCCAT
GCCTGGTCGG TGTACAGAAA CGAGCCCGGC GTCTGCCTGG TGACGGCCGG GCCCGGTTTT
ACCAACGCCA TCACCGGTAT TGCCAACGCC CACCTGGAGA ATGTCCCCCT GGTGGTGCTG
TGCGGCCGCC ACCCGATTCG GGACGACCTC AAGGGCGCGT TGCAGGAGAT GAACCAGATC
GACATGGTAA AGCCTGTCAC CAAGTGGTGC GCCACCTGCT ATGACGCGGC CCGTATTCCC
GAGTATCTCT CCATTGCCTT TCGCCAGGCC ACCATGGGCC GTCCCGGCCC GGTATTCCTG
GAACTGCCGC CGGACATCCT GTTTGCCGAG ATCGACGAGA GCCTTGCGTC CATGCCTGTC
CGCCGGCGCC ACAAGACGCG TGTTTCACCG GCTCCTGACG AGCTGGAGGC CGCGGCCCGG
ATCATTAATG GCGCTCAAAA GCCGATGTTT CTGGGCGGCA CCGGCATCGG CATGAGCGAC
TGCGGCGTTG TGCTGGAACA GTTTCTTGAG AAAACCGGCC TGCCCTTTGC CCTTGTCAAC
TACGGCCGGG GCGTTCTGCC CGACACCCAT TCACAGTCGG TCAATCCCGG CGGGTTCACC
GGCCTTACCG CCGGCCTGCC CATGTGCGAC GTGATTGTGG CCGCTGGCAT CCGCTTCAAC
TGGGTACTTC AGTCCGGCAG CCTTTTTCCC GACGCAAAGG TGATCCGCAT CGACATCGAC
CCGGCTGAGC TGGACCGCAA CCGGGCCGCG GACGTTGGCC TGGCCGGCGA CGCCGGCCGG
GTGCTGGAGC AGCTGCTGCC CCTGGTGGAA CAACGCAGCC ATGAAAAGTG GCTGGAGACG
TTTAAGAAGG CTTATACGGC TTTTATGACC ACGGAGCTGG AAATGCGGAG CACCCCTTCC
GACCCGATTC ATCCGTCCCG TCTGGTGGAG CGGATTTACA GCGCGTTCGG CGAGGACGCC
TATTATGTGG CCGACGGCGG AGACACCACC TATTACGGTA TGTCCGGGTT TTCCTCGCGC
CACCGGGCCG GGGTTCTGAC GCCGGCCGGA GGTCTGCTGG GGTGCCTGGG CACGGGCATT
CCCTTTGCTC TGGCCGCCAA GCTGGCCCAT CCGGACAAGC CGGTGATCGT GCTCAACGGC
GACGGCTCCT TCGGGTTCAA CAGCATGGAA TTTGACACGG CCGTGCGCCA CAACATTCCC
ATCATCTGCG TGGTCAACAA CGACTGCGCC TGGGGCATGA TCAAGCACTC CCAGGAGATC
AGCCTGGGCC CGGACCGGTG CACCTGCGCC GACCTGGGGC TGCGCCATTA TGAAAAGATG
GTGGAGGGGC TGGGCGGCTA TGGCGAACTG GTGACAAAAG ACGAAGAGAT TGTGCCGGCC
ATCAAACGGG CCGTGGATTC GGGAAAGCCG GCCTGCATCA ACGTGCTTAC CGATCCCACG
GTGACCAGCC CGGCAACGAT TCTGTTTTAC CAGAGCTTTT CCGGGCTGGC ATGA
|
|---|
| Protein sequence | MSKKITGGHL AAKYMKQMEQ VDTIFTISGG HIENLLDGLS EYGIRTIDVR HEQAAAMMAH
AWSVYRNEPG VCLVTAGPGF TNAITGIANA HLENVPLVVL CGRHPIRDDL KGALQEMNQI
DMVKPVTKWC ATCYDAARIP EYLSIAFRQA TMGRPGPVFL ELPPDILFAE IDESLASMPV
RRRHKTRVSP APDELEAAAR IINGAQKPMF LGGTGIGMSD CGVVLEQFLE KTGLPFALVN
YGRGVLPDTH SQSVNPGGFT GLTAGLPMCD VIVAAGIRFN WVLQSGSLFP DAKVIRIDID
PAELDRNRAA DVGLAGDAGR VLEQLLPLVE QRSHEKWLET FKKAYTAFMT TELEMRSTPS
DPIHPSRLVE RIYSAFGEDA YYVADGGDTT YYGMSGFSSR HRAGVLTPAG GLLGCLGTGI
PFALAAKLAH PDKPVIVLNG DGSFGFNSME FDTAVRHNIP IICVVNNDCA WGMIKHSQEI
SLGPDRCTCA DLGLRHYEKM VEGLGGYGEL VTKDEEIVPA IKRAVDSGKP ACINVLTDPT
VTSPATILFY QSFSGLA
|
|---|
| |