| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1248 |
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| Symbol | |
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| ID | 5694082 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 1491426 |
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| End bp | 1493132 |
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| Gene Length | 1707 bp |
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| Protein Length | 568 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641263841 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001529131 |
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| Protein GI | 158521261 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.55232 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAACACCG TTGACAACCA GATCCAGTCG CTGCTGGAAA GAATCTACGA CCCGGACACG
GCCGGCCAGG CCGCTGGCCA TCTGAACCGC CTGATGGCCG GCTTTCCCGC ACGGCCCGCA
CAAAAACAGT CCTTTTTTTC CGAGGCCGAC ACGGTCCTCA TCACCTACGG CAACACCTTG
AACCGGCCGG GCCAGGCCCC GCTGGGAACT TTGGGCGAAT TTGCCCGCAC CCGGCTGAAG
GATGCCTTTT CCGCGGTTCA CGTGCTGCCC TTTTTCCCCT ATTCATCGGA TGACGGGTTT
TCCGTGATCG ATTTTTACCG GGTGGACCCC GATCTGGGTA CCTGGGACGA CATCGCCGCC
CTGTGCAGGG ATTTTGACCT GATGGTGGAC CTGGTGCTCA ACCACATCTC AGCCCAGAGC
CCCTGGTTTT CCCGTTACCT TGCCAAAGAG CAGGGGTTTG AAGACCTGGC CATTGAGGCC
CGGCCCGGAG AAGACCTGAT GTGCGTGGTG CGGCCCCGCA CCACCCCTCT GCTGACCCCC
TTTAAAAAGG CGGACGGTAC AACCGTTCAT GTGTGGACCA CCTTTTCCGT CGACCAGGTG
GACTTGAACT ACTGCAGCGT GGGCGTGCTG GAAAAGATGG TGGATGTGCT GCTGTTCTAC
GTGGGGCAGG GGGCCGCCTT CATCCGGCTG GACGCGGTGG CCTATCTCTG GAAAAAGCCC
GGCACTTACT GCATTCACCT GGAACAGACC CACGACATGG TCCGGCTGTT TCGGGCCGTG
CTGGACCGGG TGGCCCCGGA CACGGTGCTG GTCACCGAGA CCAACGTGCC CCACGCCGAA
AACATCAGCT ATTTCGGCCA TGGCGGGGAC GAGGCCCAGG TGGTGTACAA TTTTACACTG
CCGCCCCTGC TGCTTCATGC CTTTATTACG GAGAACACCG CAGCCCTGAC CCGGTGGGCC
GCCACCCTGG AACTGCCGTC GGACCGCACC ACTTTTTTAA ACTTTACCGC CTCCCACGAC
GGTATCGGGG TCCGGCCCCT GGAGGGCATT CTTCCCGAGG CCGAAATCGA CCGGCTGACG
GCCCATACCC TGGAAAACGG GGGCCAGGTC TCTTTTCGCA CCCGGCCGGA CGGCTCCCAG
GCCCCTTATG AGCTCAACAT CACCTACCTG GACGCCCTGA GCCGGGCCGG CGACAGCGAT
ACCACCCGTG CCGCCCGCCT GCTGGCCTCC CTGGCCGTGC AACTGGCACT GCCCGGCATA
CCGGCGGTCT ACATTCACAC CCTGCTGGGT ACGCGCAACT GGGCCGATGG GGTCAAACAG
ACCGGCCGGG CCCGCACCAT CAATCGCCGG CCTCTGGACA CAGACGATGT AAACCGGGCC
ATTGATACAG CCGGCACTCT TGGCCACGCG GTTTTTCACG CGGCCCTTTA CCTACTGAAC
CTGCGCCGGC GCCAGCCCGC GTTCCACCCC AACGCGCCTT TTGCCGTGCT GGACCTCTCT
TCCCGTGTTT TTGCCATTCG CCGGACCTGC GCCGAACAGA CCCTGGTCGC CGTCACCAGT
GTGTCGGGTG CTTCCCAGAC CATTGCATTG CCGCCGGACA CCCCGGCCCA AATGACCGAC
CTGGTGACCG GCCGGCCCAT GAACACCGGC GATCTTCACC TGGAACCCTG GCAGACGGTA
TGGCTGGCCG ATGCGGCCCC TTTATAA
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| Protein sequence | MNTVDNQIQS LLERIYDPDT AGQAAGHLNR LMAGFPARPA QKQSFFSEAD TVLITYGNTL
NRPGQAPLGT LGEFARTRLK DAFSAVHVLP FFPYSSDDGF SVIDFYRVDP DLGTWDDIAA
LCRDFDLMVD LVLNHISAQS PWFSRYLAKE QGFEDLAIEA RPGEDLMCVV RPRTTPLLTP
FKKADGTTVH VWTTFSVDQV DLNYCSVGVL EKMVDVLLFY VGQGAAFIRL DAVAYLWKKP
GTYCIHLEQT HDMVRLFRAV LDRVAPDTVL VTETNVPHAE NISYFGHGGD EAQVVYNFTL
PPLLLHAFIT ENTAALTRWA ATLELPSDRT TFLNFTASHD GIGVRPLEGI LPEAEIDRLT
AHTLENGGQV SFRTRPDGSQ APYELNITYL DALSRAGDSD TTRAARLLAS LAVQLALPGI
PAVYIHTLLG TRNWADGVKQ TGRARTINRR PLDTDDVNRA IDTAGTLGHA VFHAALYLLN
LRRRQPAFHP NAPFAVLDLS SRVFAIRRTC AEQTLVAVTS VSGASQTIAL PPDTPAQMTD
LVTGRPMNTG DLHLEPWQTV WLADAAPL
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