| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1171 |
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| Symbol | |
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| ID | 5694005 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 1397843 |
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| End bp | 1401241 |
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| Gene Length | 3399 bp |
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| Protein Length | 1132 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641263764 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_001529054 |
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| Protein GI | 158521184 |
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| COG category | [L] Replication, recombination and repair
[S] Function unknown |
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| COG ID | [COG0210] Superfamily I DNA and RNA helicases
[COG1379] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00375] conserved hypothetical protein TIGR00375 |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTTACA TAGCGGACCT GCATATTCAT TCAGCCTACT CACGGGCCAC TTCGTCGGAC
CTGGATTTTG AGCATCTTTA CATCTGGGCC CAGATCAAGG GCATCACCGT ATTGGCCACC
GGGGACTACA CGCACCCGGC CTGGTTTGCC CAGATCTCTG AAAAGCTGGT GCCTGCCGAA
CCGGGCCTGT TTAGGCTCAA AGATGATCTG GCAAAGGTGT GTGATGCAGA GGTGCCGGCT
GCGTGCCGAA GACCGGTGCG GTTTGTGCTG TCCACGGAGA TCAGCAATAT CTATAAAAAA
GCCGGGGCCG TTCGAAAAAA CCACAACCTG GTTTTCATGC CCGGTCTGAA GGCAGCGGCC
CGGTTTAACG CGAAACTTGG TGCCATTGGC AACATTCAGT CCGACGGCCG GCCCATTCTT
GGCATGGATG CCAGAAATCT TTTGGAAACG GCCCTTGAGG TCTCTTCGGA CGCCTTTTTT
GTGCCGGCCC ATGTCTGGAC CCCCTGGTTT TCCCTGTTCG GCTCCAGGTC GGGGTTTGAC
GCCATCGAAG CGTGTTTTGA GGACCTGACC GATCAGGTGT TTGCCCTGGA GACCGGGCTC
TCGTCGGACC CGCCCATGAA CTGGCGGGTG TCCGGCATTG ACGGCCGGAC CCTGATCTCC
AACTCCGACG CCCACTCTCC GGCCAACCTG GGCCGGGAAG CCAACCTGTT TGACACCGAA
CTCTCCTACG GCGCCATGAT AGATGCCATG AAAACCGGCG ACCCGGACCG GTTCCTGGGC
ACCTACGAGT TTTTCCCGGA AGAGGGCAAG TATCACCTGG ACGGGCACCG GGACTGCGGT
ATTCGCCTGC ATCCGGCCCA GACCCGCCAG CACCAGGGGC TCTGCCCGGT GTGCGGAAAA
CCCCTGACCC TGGGCGTGCT CTACCGGGTG GAGGAGCTGG CCGACCGGGA CGAGGGCAGC
CTGCCCGCAA AGAGCCACCC CTTTTACAGC ATCATTCCCC TGCCGGAGAT AATTTCCGAA
CTGGTGGGGG TGGGCCCCAA GTCCAAAAAG GTGGTCCAGG CCTACCGGTC GGTGCTGGAG
CGCCTGGGGC CGGAGTTTGA CATTCTTTAC CGGCTTCCCG CAGAAGAGAT CGTTCAAAGC
GGATTGCCCC TGCTGGATGT CGCTGTATCG CGCATGCGGG AGGGCAAGGT AACACGGTCT
GCCGGTTATG ACGGCGCCTA CGGCCGGGTG ACCCTTTTTT CAGACGGTGA GATCGAACGG
CTCAAAGGCG AACAGCATCT TTTTGCCGTG CCAAATGCTC CTGCGCCGGC AAAACAGGTC
CCGCTGGTTG CGGCTCCCCG CCAGGCCTCT CTTTTTGAGG CGCCGGACGT TGTTCCAGCC
CCGGTCGTGG CCGAACCGGA AAACATAACC GCCGGTCTTA GCACGGCCCA ACTGGCCGCA
GTTAATCACG GCGCCGGCCC CATGGTGATC GTGGCCGGGC CGGGCTCGGG CAAGACCCGG
ACCATCACCT GCCGTATGGC CCACCTGATA CAGGCACGGC AGGTGCCGGC CGGTGCGGTT
CTGGCCATTA CCTTTACCAA TCGGGCGGCC CGGGAGATGG CCGATCGCCT GGCCGCCATG
CTGGGCGGCA ACACCGATCT TCCCTTTGTC TCCACCTTTC ACGGGTTTTG CCTGGGCCTG
CTGCGGGAGC AGGGCGGTTT TGACGCCGTG GTACTGGATG AGTATGACCG GCGTATCCTG
GCAAAAACGG TGCTCAAACG GGCCGCGGCC GGCAAGGCGG ATGGCCTGCC CGGTCCGGAC
CGGCTGCTGG ACATGATTGC GTCGGCCAAG CAGGCCATGC TGGGGCCCGG TGATGACCTG
TCGGGTGTGG CACGGGAGAC GGCCCCCGAT CTTCTGGCAA CCCTTTACGG CGACTACCAG
GCGTTGCTGG CCGAAAACAG CGGCTGCGAT TACGAAGACC TGATCTGCCG GGCCGTGGAC
CTGCTGGAAG GCCATAAGGA TGTGCGGCAG ACCGCGCAGC AGCGGTTTGT TTATATATTC
GTGGATGAGT ACCAGGATGT GAACCACGCC CAGTACCGCC TGATCCAGGC ACTGGCGCCG
GCCGGCGGCA ACATCTGCGT GATCGGGGAT CCGGACCAGG CCATCTATGG GTTTCGCGGT
GCCAGCGCCG CCTATTTCCA GACCTTTGAA ACCGACTACC CCGGGGCCGC CCGCTTTTTT
CTGGAAAAAA ATTACCGCTC CACCCAGACC ATTGTGTCCG CCGCTTATCA TGTGATCACC
GGTCAGGACG ATGACCCGGG CCGGGTTCGG GTTTACTCGG ACATTGCCGG TGTTCCCGTT
GTCACCGTGG CAAGGCTTGC CTCGGAGCGG GCCGAGGCGG TTTTCGCGGG CCGGACCATT
GAGCGAATGG TGGGGGGGCT CGGTTTTCAT TCCGTTGATT TTGGCAAGGC CGGATACGAG
GCCCCTGCCG GGCTCGGGTT TGCCGATTTT GCCGTGCTGT GCCGGACCCG TCGCCAGACG
GAAGTTTTTG CCGATGTCCT TGAGTCAGCG GGCATTCCCT GCCACGTGGT GAGCAAACAG
AGAATTTACG CGGCCCGGGG CGTGGGCGAA GCGATTTCCC TGCTGCGGCT GGCAGAAGGG
CAGGCCACCT TTATCGACCT GGAAAAGGCC GGAGGAGTGC TTTACGGCGC CACCGCGGCA
AAAAAGCAGG CTGTGATTTC CGCGTGGGCA AAAGAGCGCA ACCTGCCGGC GGCCGAGGTC
CTTGCCGCCA CCGAGCGGTT TCCGGTGCCC GGCCTTTCCC AGGCGGCCCA GCGCCGGCTG
GCCGGGGCGG CCCGCACCGT GGCGGAGTTA AAGGCCCGAA CCGGCCATCT TCCGGTTGCC
GGGCGGCTGC GCTTTCTGAT AGAAAACATG GAACCGCTTG CGACCCTTGT AAACGGGAGT
AAAAAGAATC GGGAAGCTTT TGACGCGGCG GTTGAAGCGG CCCGGCCCGC GGGCACGGAC
GCAACCGCTT TTTTTGATAC CGTGGCCCTG GCCGCGGATG CCGATGCCGT TATGCCGGGT
GTGGACCGGG TGCGGCTAAT GACCCTGCAC GCGGCCAAGG GCCTTGAGTT TGCCGTGGTG
TTTGTGGCCG GCTGCGAAGA GGACCTGGTT CCGTTTTCGG GATATGGCGA CAGGGCGACG
GATATTGACG AGGAGCGGCG GCTTTTTTAC GTGGCCATGA CCCGGGCAAA AGAGCGGCTT
TTTTTGACCT GGGCGAAAAA CCGCACCCTT TACGGCAAAA GAAAGGCCTG CACCCTTTCC
CGGTTCGTGG CGGATATCGA AGGCGACCTG AAGGAGCAGG CCGAGGTGGA AACAGGCAGG
CCGCCCAAAG ACGGGCATGT ACAGATGGAA CTGTTTTAA
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| Protein sequence | MRYIADLHIH SAYSRATSSD LDFEHLYIWA QIKGITVLAT GDYTHPAWFA QISEKLVPAE
PGLFRLKDDL AKVCDAEVPA ACRRPVRFVL STEISNIYKK AGAVRKNHNL VFMPGLKAAA
RFNAKLGAIG NIQSDGRPIL GMDARNLLET ALEVSSDAFF VPAHVWTPWF SLFGSRSGFD
AIEACFEDLT DQVFALETGL SSDPPMNWRV SGIDGRTLIS NSDAHSPANL GREANLFDTE
LSYGAMIDAM KTGDPDRFLG TYEFFPEEGK YHLDGHRDCG IRLHPAQTRQ HQGLCPVCGK
PLTLGVLYRV EELADRDEGS LPAKSHPFYS IIPLPEIISE LVGVGPKSKK VVQAYRSVLE
RLGPEFDILY RLPAEEIVQS GLPLLDVAVS RMREGKVTRS AGYDGAYGRV TLFSDGEIER
LKGEQHLFAV PNAPAPAKQV PLVAAPRQAS LFEAPDVVPA PVVAEPENIT AGLSTAQLAA
VNHGAGPMVI VAGPGSGKTR TITCRMAHLI QARQVPAGAV LAITFTNRAA REMADRLAAM
LGGNTDLPFV STFHGFCLGL LREQGGFDAV VLDEYDRRIL AKTVLKRAAA GKADGLPGPD
RLLDMIASAK QAMLGPGDDL SGVARETAPD LLATLYGDYQ ALLAENSGCD YEDLICRAVD
LLEGHKDVRQ TAQQRFVYIF VDEYQDVNHA QYRLIQALAP AGGNICVIGD PDQAIYGFRG
ASAAYFQTFE TDYPGAARFF LEKNYRSTQT IVSAAYHVIT GQDDDPGRVR VYSDIAGVPV
VTVARLASER AEAVFAGRTI ERMVGGLGFH SVDFGKAGYE APAGLGFADF AVLCRTRRQT
EVFADVLESA GIPCHVVSKQ RIYAARGVGE AISLLRLAEG QATFIDLEKA GGVLYGATAA
KKQAVISAWA KERNLPAAEV LAATERFPVP GLSQAAQRRL AGAARTVAEL KARTGHLPVA
GRLRFLIENM EPLATLVNGS KKNREAFDAA VEAARPAGTD ATAFFDTVAL AADADAVMPG
VDRVRLMTLH AAKGLEFAVV FVAGCEEDLV PFSGYGDRAT DIDEERRLFY VAMTRAKERL
FLTWAKNRTL YGKRKACTLS RFVADIEGDL KEQAEVETGR PPKDGHVQME LF
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