| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1087 |
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| Symbol | |
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| ID | 5693921 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | - |
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| Start bp | 1285985 |
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| End bp | 1288411 |
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| Gene Length | 2427 bp |
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| Protein Length | 808 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641263681 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001528971 |
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| Protein GI | 158521101 |
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| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF
[COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAG ACAAGTCTCT TACCCTGTTC AATAAGGCCG TGGCCCTTCA CCGGGCCGGC
AGCCTGGAAG GCGCGGAAAC CCTTTACCGC GACCTGCTGC GGGAGAACCC CAACCATGCC
GACGCCCTGC ACCTGCTGGG CACGATCATG GCGGCCAAAA AAGACCTGGT GGCGGCCGAA
GGCACCCTGC GAAAGGCCGT TGAAAAGGCG CCGAAACAGG CCGCCTTTCA CAACAGCCTG
GGCCAGGTGC TGCTGAAAAA AGGACAAACC GATGAGGCGG CCGCCGCTTT CCAGAGGGCC
GTGTCCCTGG ACCCGGGCCT GGCCCAGGCC CACTTCAACC TGGGCAAAAT CAGCAAGGCC
GCCGGCCGCG CAGATGAGGC AAAAACCTTT TTTGAGAAAA CATTGAACCT GGCCCCGCAT
CACCTGGCGG CCAGAAACAA CCTGGGCAAC CTGCTCCAGC AGGCCGGCGA CAACGACGGG
GCCCTTGCCT GTTTTGAAGC CGTGCTGAAA ATCAACCCCC GGCAGGCCGA GGCCCACTAC
AACATCGGCA ACATTCACAA ACTTCGTGAG GAAGTCGAGC CGGCGGCCCG GTACTACGAA
CAGGCCATTG CCTGCAACCC CGGCTTTGTT CCGCCCTACA TCGGCCTGGC CCGCATTCAC
CTGGCAAACC GGCGCAACGA CCTGGCCGAG TCGCTGATTC GCAAAGCCCT TCGCATGGAT
CCCAAAAACG GCGAGGCCCT GTCCGAACTG GCCAACCTCT ACCTGCGGGA GGGCCGCATC
GAAGAGGCGG TGCCGGTCTT TCTGGCCGCC ATTCGCGTCT CTCCGGAAAA GGCGGAACTT
CATGGTGCCC TGGCCACGGC CTACAGCATT CGGGGCGCTA CCTCCCAGGC CATGGCCAGT
TTTGAAAAAG CTCTTGAACT GGATCCGGAT TCGGCCCGGA CCCGCTTTTC CTACGGCAAC
CTGCTGGAGT CTTCGGGCAA CCGGGAGGGG GCTCTGGAGG CATACCGGCG CGTCATGGCC
CTGGATCCCG ACTTTGCCAC CCAGGTCTTC TATTACCAGT TTCAGCTGGA GATCAAGCTG
GGCATGTGGG AGCACTACGA GAAAAAGGTG GCGGAGCTGG TCCGGCGTAC CGAAGACTAC
CTGGCCCTGG AAAAACCGCC TTATGACCTG TCGCCCCTTA TTCTCAACTA CTTTCCGGTG
CCCGGCCACA TGCACAAGGC CGTGGCCACG CGCAAGGCAA AACTGATCGA CGACAACATG
GCTTCGGCCC GTGCCGCATT CGCCTTTGTA CACCCGAAAA ACGCCTTCGG CCGGCTGCGC
ATCGGGTACC TTTCACCGGA TTTCCGGGAG CACGCCGTGG GCATCGTGAT CAACGACATC
TTCAAGCATC ACGACACGGA AAATTTTGAA ATTTTTGCCT ACAGCCTGGT GGACGTGGAT
GATGACACCA GCCGCAAGCT GAAAACCGAG TGCGAGCACT TTGTCGACGT GTCCAAGGTC
TCTCCCCGAA AGGCGGCCGC CATCATCTAT AACGATCATC CCCACATTCT CATCGACCTG
GCCGGGTACA CCACCTTTTC CCGGCCCGAG GTGCTGGCCC TGCGGCCGGC CCCGATCCAG
GCCTCTGCCA TCGGGTATCC CAACACCATG GGCGCCGGCT TTATCGACTA TATCCTGGCC
GACCGGTGGC TGATCCCCGA AGAGATGCAG GATGCCTATA CCGAAAGAGT GGTCCGGCTG
CCCCATGCCT TTCCGTCATC GGCCTTTGCC ATCTCCGACA AGCCCATGAC CCGGTCCGAT
GCCGGGCTTC CGGAAGCCGG GTTTGTGTTC TGCTGTTTCA ACGCGGTTTA CAAGATGGAG
CCGGAGACCT TTGGCGCATG GATGGAGATT TTAAGAGAGG CAGACAACGC TGTGCTGTGG
CTTTCCGCTG CCAGTGACGC CATTCGGCAG CGGCTGACCG ACCGGGCCGT GGCCCATGGC
GTGGATGCCG GCCGGCTGGT GTTTGCCGAA AAGCTGCCCC ATCCGGAATA CATGGCCCGG
TATCAGCTGG CCGACCTGTT TCTGGATACC TTCTTATATA CCGCCGGGTC CACGGCGGTG
TGCGCCCTTC ACGGCGGCGT GCCGGTGCTC ACCCGCACCG GCCCCACCAA CGCATCCCGC
ATGGGGGCCA GCATCTGCGC GGCCGCCGGC ATGGAAGAGA CCATCTGCCC CGACACCGAG
GCCTATATTC AACGGGCCGT CCACCTGGCC CGCCACCCGG AGGAAGCGGC GGCCTTAAAG
GAAAAACTGG CGGCCAATCA AAAGACCGCT CCCCTGTTTG ACCCGGCCGC CTACACCCGC
GGTGTTGAGG CGGCCTGCAG AAAAATGTGG GAACGGTATG AAAGCGGACA AAGCCCGGAG
GCCATGACCA TCACGAATAG CGGATAA
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| Protein sequence | MKKDKSLTLF NKAVALHRAG SLEGAETLYR DLLRENPNHA DALHLLGTIM AAKKDLVAAE
GTLRKAVEKA PKQAAFHNSL GQVLLKKGQT DEAAAAFQRA VSLDPGLAQA HFNLGKISKA
AGRADEAKTF FEKTLNLAPH HLAARNNLGN LLQQAGDNDG ALACFEAVLK INPRQAEAHY
NIGNIHKLRE EVEPAARYYE QAIACNPGFV PPYIGLARIH LANRRNDLAE SLIRKALRMD
PKNGEALSEL ANLYLREGRI EEAVPVFLAA IRVSPEKAEL HGALATAYSI RGATSQAMAS
FEKALELDPD SARTRFSYGN LLESSGNREG ALEAYRRVMA LDPDFATQVF YYQFQLEIKL
GMWEHYEKKV AELVRRTEDY LALEKPPYDL SPLILNYFPV PGHMHKAVAT RKAKLIDDNM
ASARAAFAFV HPKNAFGRLR IGYLSPDFRE HAVGIVINDI FKHHDTENFE IFAYSLVDVD
DDTSRKLKTE CEHFVDVSKV SPRKAAAIIY NDHPHILIDL AGYTTFSRPE VLALRPAPIQ
ASAIGYPNTM GAGFIDYILA DRWLIPEEMQ DAYTERVVRL PHAFPSSAFA ISDKPMTRSD
AGLPEAGFVF CCFNAVYKME PETFGAWMEI LREADNAVLW LSAASDAIRQ RLTDRAVAHG
VDAGRLVFAE KLPHPEYMAR YQLADLFLDT FLYTAGSTAV CALHGGVPVL TRTGPTNASR
MGASICAAAG MEETICPDTE AYIQRAVHLA RHPEEAAALK EKLAANQKTA PLFDPAAYTR
GVEAACRKMW ERYESGQSPE AMTITNSG
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