Gene Dole_1054 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDole_1054 
Symbol 
ID5693889 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfococcus oleovorans Hxd3 
KingdomBacteria 
Replicon accessionNC_009943 
Strand
Start bp1242199 
End bp1245456 
Gene Length3258 bp 
Protein Length1085 aa 
Translation table11 
GC content62% 
IMG OID641263651 
Productexodeoxyribonuclease V, gamma subunit 
Protein accessionYP_001528941 
Protein GI158521071 
COG category[L] Replication, recombination and repair 
COG ID[COG1330] Exonuclease V gamma subunit 
TIGRFAM ID[TIGR01450] exodeoxyribonuclease V, gamma subunit 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTATTTTT TTACAAGTAA CCGCATGGAG ATGCTGTCCC GCGCCTTTTG CGAGGCCCTG 
ACGGCATATC CCCTGGACAA TCCTTTTGCG CGGGAAACCA TTGTTGTCCA GAGCATGGGC
ATGAAGCGGT GGCTCTCCAT GGAGATGGCC CGCCACACCG GTATTTGCGC TCACAACCGG
TTTCTTTTCC CCAACGCGTT TTTAAACCAG ATGCTGCAGA CCGCCTTTGC CGATGCGGTC
CCGGTTTCTC CCGATGTGGG GGTGGAGGCC ATGACATGGG CCGTTTTTCC GGTCCTGGCC
GATGTTTTTG CCCATCCCGC CCTTTCGCCC CTTCAGGCCT ACCTGCAGGA CGGCGATGTG
ATCAAGCGGT ACCAGCTGGC GGCCCGGATT GCCGACACCT TTGATCAGTA CCTGGTGTTT
CGGCCGGACA TGCTGCTGCA GTGGGAAGCC GGCGCGCTTC CCGCGGACCC CCATGAAAAG
TGGCAGGCTC ACCTGTGGCG GCTTCTGATT TCCCAGGGCT GGGCCGAACA GCGGGCCGAA
CGCTGGAAAC AGTTTCTCTC CCTGGCCCAG AGCGGGGCGC TTGCCGGCAG CACCCTTCCA
TCCAGGGTGT CCGTGTTCGG CATATCAACG CTGCCCCGGT TCCATGTGCA GGTGTTTGCC
GCGCTTTCCG CTTTCCTGGA GGTACGGTTT TTCGTATTGA ACCCCTGCCG TCACTACTGG
GGAGACATCC TGTCCACCTA TGAAAAGAAA CAGGTAGAGA CAGGGGCCGA CGCCCGGGAT
ATTCCGGAAG CGGCTCGCCA CCTGGAAACG GGTAACAGCC TTCTGGCCTC CATGGGAATG
GTGGCCCGTG ATTTTTTTGC CATGGTGGAG GACCATCCCC ACCAGGAGAC CTCGCTGTTT
GCTCCTGCCG GGGAGACCAC CATGCTGGCC TGCCTTCAGA ACGATATTCT GGACCTGAAG
GATGCGGCTG ACCAGGAGCG GGTGCGGGTG GACGGAAATG ACGCCTCTAT GCAGATATCC
GTCTGCCACA GCCCCATGCG GGAGGTAGAG GCGCTTCATG ACAACCTGCT GGCCATGTTT
GAGGCGGATG CCGGCCTATC GCCCGAGGAT GTGCTGGTCA TGGCGCCGAA CATGGAGGTG
TACGCCCCCT ATGTGGAAGC GGTGTTTGAT GCCGGTGCCG ACGATGGAGG ACAGCGGGTC
CCTTACACGG TCACGGACCG CCGTTCAAAG TCGGGCAGCC CGGTGGTCAG GACTTTTCTG
GGCCTGATGG ACCTCTGGGA ATCCCGCTTT GGAATATCCG CCGTGCTTGA AATTCTGGAA
TCCGCCTTTG TCCGGGAGCG GTTCGATATC GGAGAGGCCG AGTTTTTTCG CATTTCCCAG
TGGCTGGTCG ATGCGGGCGT ACGGTGGGGA CTTGACGGTG CCTTCAAGAC AGACCGGGAC
CTTCCCGAAT TTTCTGAAAA CACCTGGAAG CAGGGCATCG ACAGCCTGGT GCTGGGATGC
GCCATGGCCG GGAAGGGTGA AATCCTTTTT GACGGCCTGC TGCCCTATGA TCATATGGAG
GGCAGTGACG TCGACAGCCT TGAAAAGTTT CTGGCGTTCT GGCATGTGCT GCTCCGGTTT
TACCGGCAGT GCGGCGGCGC CCACGCCCCG GGCCGGTGGC GACAGATACT GACCGCGCTG
GTGGAGTCGA TGTTTGCCGC GGACCCGGCC GTTGAGGCGG ACCTTCAGGT GATAACCGAT
GCCCTGAACG CCCTTGGGGA AAGCGCGGCC CACGCCGGGT TTGACGGCCC GGTGGACCTC
CCGGTGATCA GGGAATTTTT AAACCGCCGT TTCGAGGGCC AGGCCTACGG CGCGCCGTTT
ATTTCCGGCG GCGTCACCTT CTGCTCCATG CTGCCCATGC GCAGCATTCC CTTTGCCGTG
ATCTGTCTGC TGGGCATGAA CGTGGACGAT TATCCGCGGC AGACCTTTTC TCCCGGTTTT
GACATGATTC GCAAACACCC CCGGCCCGGG GACCGCTCCA AGCGAAACGA CGACCGGTAC
CTGTTTCTCG AGACCCTGCT GTCGGCCCGG CGGCGGCTCT ACATCAGTTA CGTGGGCCAT
GATATGCGGG ACAACAGTGA CCGTCCGCCT TCGGTGCTGG TGGGCGAACT GTGCGACTAC
CTTCGGGAAC GGTTCGACGC CGGCCCCTTG ACCGACGTGG TGGAAAAGAT CACCACCCAC
CACCGGCTTC AGCCTTTTCA CCCGGACTAT TTCTCCAGCG ACACGCAAGC GCGGTTCAGC
TATGCCGCTG ATTATCTGGC CGCGGCCCGG CAGCTGGCCG GCGGCCGACC GGGTCGGCCG
GCCGCACTGG AACCGGCGGT CCCGGTCCCT GACAACGCGG ACCCCCAGAC CATTGAGGTG
GAGGACCTGT GCCGTTTTTT CGCCCACCCG GCCCGCTATT TTCTGACGCA GCGTCTTGGC
CTGCGCGTCG CCGAGACCGA CCGTATTCCG GAAGAGGCCG AACCGTTTGA GGTGGCCGGG
CTGGAGCGGT ATGACATGGC CCGGCGGCTG GTAGAACGGC TGCTGGCTGA AGACCCGGCG
GCACCACTGG AAAACGCGCT GCGGGCCAGC GGCATCCTGC CGCATGGTGA ACCGGGAAAG
CGACTGTTTG AACGGTTGAA AACCGGGGCC GCCGGCTTTG TCGCCGGTGT TCGGGCGGTG
ACAGCCAATG GTGGCCTGGA CCGCCGGGAG ATACGGCTGG ATATCAACGG CACCACCCTT
TGCGGTACCC TGGATGGGAT CGGTGAACAG GAGTGGTTCC GGTTTCGGTA CGCAACGGCC
CGGCCCGGTG ATTTTATCAC CAACTGGATC GCCCATCTGG CCTGGAGCGT GGACCAGGGC
CGTGCCGGCT CAGGTCGGTT CGCGGCCAGG GATGGATGGT GGGCCTTTGA TCCGGTGGAT
AACGGCCTGT CGATACTGGC GGCCCTGATT GAAATTTACC GGCAGGGACG CCTGCGCCCT
CTCCATTTTT TCCCCCGCAG CGCTTTTGTC TATGCCGAAA CCCTGCAAAA AAAAGGCAAT
GCGTCCATGG CCCTGGACCG GGCACTTCAG GCATGGCGGG GCAACGAACG GGTGGCCGGA
GAAAAAGAGG ACCCTTTTTA CGCGCTCTGG TTTGCCGGGG ACGATCCCTT GGACGATGAA
TTTGAAACCC TTTCCACGGC AGTGGTGACC CCGCTGCTGG CCTGCAGGAG ACCGGATGGC
CCGCCGCGAA CCGTTTGA
 
Protein sequence
MYFFTSNRME MLSRAFCEAL TAYPLDNPFA RETIVVQSMG MKRWLSMEMA RHTGICAHNR 
FLFPNAFLNQ MLQTAFADAV PVSPDVGVEA MTWAVFPVLA DVFAHPALSP LQAYLQDGDV
IKRYQLAARI ADTFDQYLVF RPDMLLQWEA GALPADPHEK WQAHLWRLLI SQGWAEQRAE
RWKQFLSLAQ SGALAGSTLP SRVSVFGIST LPRFHVQVFA ALSAFLEVRF FVLNPCRHYW
GDILSTYEKK QVETGADARD IPEAARHLET GNSLLASMGM VARDFFAMVE DHPHQETSLF
APAGETTMLA CLQNDILDLK DAADQERVRV DGNDASMQIS VCHSPMREVE ALHDNLLAMF
EADAGLSPED VLVMAPNMEV YAPYVEAVFD AGADDGGQRV PYTVTDRRSK SGSPVVRTFL
GLMDLWESRF GISAVLEILE SAFVRERFDI GEAEFFRISQ WLVDAGVRWG LDGAFKTDRD
LPEFSENTWK QGIDSLVLGC AMAGKGEILF DGLLPYDHME GSDVDSLEKF LAFWHVLLRF
YRQCGGAHAP GRWRQILTAL VESMFAADPA VEADLQVITD ALNALGESAA HAGFDGPVDL
PVIREFLNRR FEGQAYGAPF ISGGVTFCSM LPMRSIPFAV ICLLGMNVDD YPRQTFSPGF
DMIRKHPRPG DRSKRNDDRY LFLETLLSAR RRLYISYVGH DMRDNSDRPP SVLVGELCDY
LRERFDAGPL TDVVEKITTH HRLQPFHPDY FSSDTQARFS YAADYLAAAR QLAGGRPGRP
AALEPAVPVP DNADPQTIEV EDLCRFFAHP ARYFLTQRLG LRVAETDRIP EEAEPFEVAG
LERYDMARRL VERLLAEDPA APLENALRAS GILPHGEPGK RLFERLKTGA AGFVAGVRAV
TANGGLDRRE IRLDINGTTL CGTLDGIGEQ EWFRFRYATA RPGDFITNWI AHLAWSVDQG
RAGSGRFAAR DGWWAFDPVD NGLSILAALI EIYRQGRLRP LHFFPRSAFV YAETLQKKGN
ASMALDRALQ AWRGNERVAG EKEDPFYALW FAGDDPLDDE FETLSTAVVT PLLACRRPDG
PPRTV