| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1042 |
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| Symbol | |
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| ID | 5693877 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfococcus oleovorans Hxd3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009943 |
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| Strand | + |
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| Start bp | 1228042 |
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| End bp | 1229754 |
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| Gene Length | 1713 bp |
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| Protein Length | 570 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641263639 |
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| Product | general secretory pathway protein E |
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| Protein accession | YP_001528929 |
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| Protein GI | 158521059 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.90473 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCATGA GCAGAGATCT GTTACAGGCA CTGAAAACCC GCGCCGTTCT TTCCGAACAG
CAGGCCGAGA AGATAGAACG GCTGATCAAT GGGGGCCGGG CCAATATTGG TGAGCTTCTT
GTCAAGCGGA AGCTGGTGAC CGAACCGCAA CTGCTGTCCG CATACAGTGA GCTCTTCGGC
ATTCCGGTCT GCGAGGCGGC CCAGCCGGAC GAGAGTGTGA TGGCCATCCC CGAAAAGGTG
CCGGCCGCGT TTCTCAAACG GTATCTCATG GTGCCGCTGA AAATGTCGTC CCACGGCCAC
GGGGCGGTCT CCGGTTGTCA GGTGGCGGTC AACGATCCGT CCCGGCTTCA TGCAGTGGAC
GATCTGACAA GGCTGATGGG TGTAGAAACA TGCTCCCTGG TACTGGCCAC CCGGGACCAT
ATTTTTTCCG CCGTGGGAAT GCTTTACGGC AGCGGAGACG GGGCGGCCGA AGAAATTGTC
CGCGACATGG AGGGGGCCGA AGACATTCTT GACGAGCTCG ACGAGGCCGC TGACCTTCTG
GACGATGCCA GTGACGCGCC TATTATCAAG CTGGTCAACC ATATCGTGGC CCAGTCGGTG
AAGGCCGAGG CCAGTGACAT CCATATTGAG GCATACCAGG ACACCTTTAA GATACGGTAC
CGGGTGGACG GCATCCTCTA TGATTTTCTG AGCCCGCCCA AGCGCATTCA GCCGGCCCTG
GTCTCCCGCA TCAAGGTCAT GGCAAAAATG AACATCGCGG AAAAGCGCCT TCCCCAGGAC
GGCCGCATGC AGGTCCGGCT GGGAGACAAG GAGGTGGATA TCCGCGTCTC TTCGATTCCC
ATTACCGCCG GTGAGCGGCT GGTGCTTCGG CTGCTCAACA AGGCCAGCTC CATGCTGGGG
TTGCAGGAGA TCGGTTTTTC CCGCCAGACC TTTGATCTGT TCAGCCGCCT GATCCGGTAT
TCCAACGGCA TCATCCTGGT GACCGGCCCC ACCGGTTCAG GCAAGACCAC CACCCTTTAC
GCCGCCCTTT CCACCATCAA CACGCCGGAC ATCAACATCA TCACCATTGA AGATCCGGTG
GAGTACCAGG TCAGCGGCAT CAACCAGATC CAGGTGAATC AGAAGATCGG CCTGACCTTT
GCCCGGGGCC TGCGCTCCAT TGTGCGGCAA GACCCGGATG TAATCCTCAT CGGCGAAATT
CGGGACCAGG AGACGGCGGA TATCGCGGTG CAGTCTGCCC TGACCGGCCA CCTGGTCTTT
TCCACGCTTC ACACCAATGA TTCGGCCAGC GCCGTCACCC GGCTGGTGGA TATCGGGGTG
GAACCGTTTC TGCTGTCTTC CTCGGTAATC GCCGTGATCG CCCAGCGGCT GGTGCGGGTG
CTGTGCCCCC GATGCAAGGA GGCCTATGTG CCGGATGACT CGGCCATTCT GAGTATCGGG
GCCTCCGTCG AATTGTTTGC CGGAAAAACG ATTTACCGCA AAACGGGGTG TGATCACTGC
CTGGGTACCG GCTACAGCGG CCGGATCGCG ATTTTCGAGA TACTGGTAAT GGATGAGAAG
ATCAAGAAGA TGGTGCTGAC CACCCACGAT TCGGGACGGA TCGAGGCGGC GGCGGTCAAA
CATGGGATGA TCACCCTTCG CCAGGACGGT ATTCACAAAG TGCTGGACGG GGTGACCAGC
ATCGCCGAAG TGTTGCGGGT AACCCAGCGA TGA
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| Protein sequence | MPMSRDLLQA LKTRAVLSEQ QAEKIERLIN GGRANIGELL VKRKLVTEPQ LLSAYSELFG
IPVCEAAQPD ESVMAIPEKV PAAFLKRYLM VPLKMSSHGH GAVSGCQVAV NDPSRLHAVD
DLTRLMGVET CSLVLATRDH IFSAVGMLYG SGDGAAEEIV RDMEGAEDIL DELDEAADLL
DDASDAPIIK LVNHIVAQSV KAEASDIHIE AYQDTFKIRY RVDGILYDFL SPPKRIQPAL
VSRIKVMAKM NIAEKRLPQD GRMQVRLGDK EVDIRVSSIP ITAGERLVLR LLNKASSMLG
LQEIGFSRQT FDLFSRLIRY SNGIILVTGP TGSGKTTTLY AALSTINTPD INIITIEDPV
EYQVSGINQI QVNQKIGLTF ARGLRSIVRQ DPDVILIGEI RDQETADIAV QSALTGHLVF
STLHTNDSAS AVTRLVDIGV EPFLLSSSVI AVIAQRLVRV LCPRCKEAYV PDDSAILSIG
ASVELFAGKT IYRKTGCDHC LGTGYSGRIA IFEILVMDEK IKKMVLTTHD SGRIEAAAVK
HGMITLRQDG IHKVLDGVTS IAEVLRVTQR
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