Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dole_1041 |
Symbol | |
ID | 5693876 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfococcus oleovorans Hxd3 |
Kingdom | Bacteria |
Replicon accession | NC_009943 |
Strand | + |
Start bp | 1225639 |
End bp | 1228038 |
Gene Length | 2400 bp |
Protein Length | 799 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 641263638 |
Product | general secretion pathway protein D |
Protein accession | YP_001528928 |
Protein GI | 158521058 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0180927 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATATG GCATAAGGCA ACTGGTATCT GTGGCGGTCT GCACGGGCGT ACTGCTGGGC GTTTACCCCC TGGCGGCCGA AGAGCCGGCC CCGGGCCCGG CCCTGCTTCA AAGGATTCGG GAACGGAGAG ATCTGCCGGT GAAACGTCCC CAGCCGGTTC GGAAAACGTT AGTGGACCAG GTCTCGGACG CGCCCTCCTT GCCGGAGGGG TTGCCGACGG CTGCCGATGA CGGAGAGAAC CTGGTTTCCG TGGATTTCAA TGATGTGGAC CTGGCGGTTT TCATCAAGTT CATCAGCGAG GTTACCGGTA AGAATTTTGT GCTTGACCAG AACGTGCGCA CCAAGGTCAC AGTGATCAGC CCTTCCAAGA TTCCCGTGGA AGAGGCCTAC CGGGTATTTG AGTCGGTGCT GGAGGTGTAT GGATTTGCCA CGGTGGAGGC GGGCGACATT ATTAAAGTGG TCAAGGCGGG TGACGCCCGG TCCAAGAGTA TCGAAACCGG TCTGGTAAAA GAGGGCAGAG CGCCGGACGA TAAACTGGTG ACCCAGATCA TTCCCCTGCG GTATGCCGAT GCCAATGAGA TCAAGGGGCT TTTCACCCCC CTGGTTTCCA AGGACAGCGT GCTGCTGGCC TACCCCTCCA CCAACATGCT GATTCTCACC GACGCCTATT CCAACATTCA GCGGCTGATG AGAATTCTTG ACGCTATTGA TGTCACGGGC ATCGGCCGGC AGGTGTCCGT GATTCCGCTG GAATACGCCG ACGCGTCAAA AATGGTTTCC ATTCTGGAGG TGGTGTTTAG GGAGGCGGTG GACCGGGGCG GACCCCCGCA GCGGGGTGGC ACCGAACCCA CGGACAAAAT CCGGCTGGTG GCTGATGATC GGGCCAACGT GGTGATCATG CTGGCCAGTG AGTCGGAAAC CGTTAAAATA CGGAAGCTGA TCACCCTGCT GGACAAGAAA GTGCAGCAGG GCAAGGAACG GATTCATGTC TACTACCTGA AGAATGCCGA TGCCGAGGAG CTGGCCAAGG TTCTGCAGAT GCTGCCCGAG AAACAGGGGG ATGCAACTGC CGAGGGCAAA AAACTGGCGC CGGTGCTCTC AAAGGCCATC AACATCACGG CCGATGCTTC CACCAACAGC CTGATCATCA TGGCCGAGCG GGACGACTAC CTGGTGCTCA AGGAGATTAT CGAAAAACTC GACATTCCCC GGTCCATGGT CTATATCGAG TGCCTCATTG CCGAAGTGAA CATCAACAAG GATTTTGAAC TGGGCGCCGA ATGGCTTGTG GGTGGTAAAG GCAGTTATGA TGACAAGGAC GGGGGATACG CCGTGGGGTT CGGTGGTGGC AGCGACACGG GCTATGCAAA CGTGGCACGC ATGGCCATGG GCGGGCTGCC CAGCGGGTTT TCCGTGGGGG CCATGGCCGA ATCCATCGTG GTAGGCGGCA TCGAGTATCC CAACCTGGCC GCGGTGGTGC GGGCCTTTAA GAAGGACAAG GATGTTCAGA TCCTGTCTAC TCCCCAGATC ATGACCACGG ACAACCAGGA GGCCACCATC ACGGTGGGTA AAAACATTCC CTACCTGACC AAGATCGGCA CCACCTCCTC GGAAGAGACC TACAGCAATT ACGAGTACAA GGATGTGGGC ATCTCCCTGA AGATCAAACC CCAGATCAAC GAAAACCGGC TGATCCGGCT GGATATCGAA CAGGAGCTGA CCAAGCTGGA CCAGCTGACC ACTGTCTCCT TGGACCGGCC GGCCACGTTG AAACGCGGTA TCACCACCAA CGTGATCGTT CATGACGAAC ACACCATCGT CATCGGCGGG CTGATTGACG ACAGCATGTC CCGGGTGGAG TACAAGGTGC CCTGCCTGGG AGATATTCCG TTTCTGGGAT GGTTGTTCAA GGGGCTTTCC CGATCCAGCG AAAAGACCAA CCTGCTTGTA TTCCTGACCC CCCATGTGAT CAAGACGGCG CGGGAAGCGG ACAATATCTA TCAACAGAAG CAGGGCGATC TGGATGCGGT TCGCGGCGGC AGTTTTTCCC TGTATCCGGA TGCCAGGGAG GATGCTTCTG CGATTGATGT CACGCCGGTA TCTTCATCGG ATACGACACC GGCGGATGAT GCCCATCAGG AAAACGAGGG GGAAGATATG ACAGCGGCGG GGGTGGTCGT GACCGAAGGA GACGGTGTGG ACCGACCTGA ACCCATGCCG GAAAAAGCGG TGGCCGCCCC GGCTGCATCT GAAGCCGATG CCGCCGAGGC CAAGCCTGTG CCTGAAACCG CCCCGCCGGT GACCGGCGGG ACAGAGGCGG ACGGGGAGAC CTCACCTTCC GTGGAGGCGC AGCCGGACGG GGACCTGCCG GTTCCTTTAT CGCCGGAAGC GGGGTCATAA
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Protein sequence | MKYGIRQLVS VAVCTGVLLG VYPLAAEEPA PGPALLQRIR ERRDLPVKRP QPVRKTLVDQ VSDAPSLPEG LPTAADDGEN LVSVDFNDVD LAVFIKFISE VTGKNFVLDQ NVRTKVTVIS PSKIPVEEAY RVFESVLEVY GFATVEAGDI IKVVKAGDAR SKSIETGLVK EGRAPDDKLV TQIIPLRYAD ANEIKGLFTP LVSKDSVLLA YPSTNMLILT DAYSNIQRLM RILDAIDVTG IGRQVSVIPL EYADASKMVS ILEVVFREAV DRGGPPQRGG TEPTDKIRLV ADDRANVVIM LASESETVKI RKLITLLDKK VQQGKERIHV YYLKNADAEE LAKVLQMLPE KQGDATAEGK KLAPVLSKAI NITADASTNS LIIMAERDDY LVLKEIIEKL DIPRSMVYIE CLIAEVNINK DFELGAEWLV GGKGSYDDKD GGYAVGFGGG SDTGYANVAR MAMGGLPSGF SVGAMAESIV VGGIEYPNLA AVVRAFKKDK DVQILSTPQI MTTDNQEATI TVGKNIPYLT KIGTTSSEET YSNYEYKDVG ISLKIKPQIN ENRLIRLDIE QELTKLDQLT TVSLDRPATL KRGITTNVIV HDEHTIVIGG LIDDSMSRVE YKVPCLGDIP FLGWLFKGLS RSSEKTNLLV FLTPHVIKTA READNIYQQK QGDLDAVRGG SFSLYPDARE DASAIDVTPV SSSDTTPADD AHQENEGEDM TAAGVVVTEG DGVDRPEPMP EKAVAAPAAS EADAAEAKPV PETAPPVTGG TEADGETSPS VEAQPDGDLP VPLSPEAGS
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