| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_1026 |
|---|
| Symbol | |
|---|
| ID | 5693861 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 1209529 |
|---|
| End bp | 1211028 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641263623 |
|---|
| Product | sodium:neurotransmitter symporter |
|---|
| Protein accession | YP_001528913 |
|---|
| Protein GI | 158521043 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0733] Na+-dependent transporters of the SNF family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000458175 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGAAA GGGAACACTG GAAAAACCGT TCGATCTTTA TCATGGCCGC CGTGGGATCG
GCCATCGGCC TGGGCAACAT GTGGCGGTTT CCCTATATCG CCGCCCAGAA CGGAGGGGGC
GCGTTTCTCA TCCCCTACAT GACGGCCCTG CTTACCGCCG GCATCCCCCT GATGATTATT
GAATACGGCC TGGGCATTCG AACCCAGGGA TCGGCCCACA TCGCTCTGGG CAAAATTCGA
AAACCCCTGC GGTTTATCGG GTGGATGGCC ATTCTGTGTG CCCTGTTTAT CAATATTTAT
TACTGCATCG TGCTGGGATG GACATGGAAC TTTCTGCTGG CCAGCCCGGA CATCGCCGTC
TGGGGCGCGG ACCTGGCCGC CAGCAAGGCC CATTTTTTTA CCGACATACT TCATATATCG
GAAGGCCCCT GGCAGTTTGG AACTATCTAC CCCAATCTGC TCTGGGGACT GGTGACCACC
TGGGTGGTGA TCTGGGCCAT CATTCGCAGC GGGCTTTCCG GCATCGGCAA GGTGCTGCTG
TTTACGGTTC CCCTGCCCGT GATCCTGGTG CTGATCCTGC TGGTAAGAGG CCTGACCCTG
GAGGGCAGCG CCACCGGCCT GAACCACTAC CTGACCCCGG ACTGGGGCAG GCTGACCGAC
TACCACGTAT GGCTGGCCGC TTACGGCCAG ATATTCTTTT CCCTTTCCGT AGGGTTCGGC
ACCATGATCG CCTATGCCTC GTTCATGCCC GAGGACACGG AACTACCCAA CTCCGCGGCC
ATCACCTCAT TTTCCAACTG CTGTTTCAGC TTTCTGGCGG GCCTGGCCGT GTTCAGCGTA
CTGGGCTATT TTGCCGTGGC CACCAACGTG CCCATGACGG AGGTCTCCCA GGCGGGGCCT
GGCCTGGCCT TTATCGTCTA TCCCGCGGCC CTGGCCAAAC TGCCGGTCTA CGTGACCTTT
TTCGGCGCCC TGTTTTTAAT CACCCTGCTC TTACTGGGCA TTGACTCGGC CTTCAGCCTG
CTGGAAACGG TCAGCGCGGC CTTGAGCGAC AAGTTCGGCA TCACCCGGTC CGTATCCACC
ACCATCACCG CGGTGTTCAG TTTTCTTGCG GGTCTGCCCC TGGCCACCGG CGCCGGTATC
TACTGGCTTG ACATCATGGA CCACTTTATC ATGTCCTATG CCATCACCAC GGTGGCCATT
GTGGAGTGCC TGGCCGTGGG ATGGATCCTG GGGGCGAAAA ATTTTGCAGC GGAAGTCAAC
CGGACCGCGG AAATAAAAAT CGGGCCGATT TTTTCCTTTA TCATCCGGTT TCTCACCCCG
GCCATTCTGG GGTATTCGGT TATTCGTACC TTTGTGGATG AGATGCAGGC CCCCTACGAA
GGGTATCCCC CTTCCGCTGT TTTCGCCATC GGCCTGGGCA CACTTGCCCT TATCGTGATC
ATTGGCGCTG TCCTGACCCT GGTTCCCACG AAAAGCGACC GGGAAAACGG AATCGTCTGA
|
|---|
| Protein sequence | MAEREHWKNR SIFIMAAVGS AIGLGNMWRF PYIAAQNGGG AFLIPYMTAL LTAGIPLMII
EYGLGIRTQG SAHIALGKIR KPLRFIGWMA ILCALFINIY YCIVLGWTWN FLLASPDIAV
WGADLAASKA HFFTDILHIS EGPWQFGTIY PNLLWGLVTT WVVIWAIIRS GLSGIGKVLL
FTVPLPVILV LILLVRGLTL EGSATGLNHY LTPDWGRLTD YHVWLAAYGQ IFFSLSVGFG
TMIAYASFMP EDTELPNSAA ITSFSNCCFS FLAGLAVFSV LGYFAVATNV PMTEVSQAGP
GLAFIVYPAA LAKLPVYVTF FGALFLITLL LLGIDSAFSL LETVSAALSD KFGITRSVST
TITAVFSFLA GLPLATGAGI YWLDIMDHFI MSYAITTVAI VECLAVGWIL GAKNFAAEVN
RTAEIKIGPI FSFIIRFLTP AILGYSVIRT FVDEMQAPYE GYPPSAVFAI GLGTLALIVI
IGAVLTLVPT KSDRENGIV
|
|---|
| |