| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dole_0565 |
|---|
| Symbol | |
|---|
| ID | 5693389 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfococcus oleovorans Hxd3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009943 |
|---|
| Strand | - |
|---|
| Start bp | 633089 |
|---|
| End bp | 634375 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641263151 |
|---|
| Product | ammonium transporter |
|---|
| Protein accession | YP_001528452 |
|---|
| Protein GI | 158520582 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0004] Ammonia permease |
|---|
| TIGRFAM ID | [TIGR00836] ammonium transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000907445 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA TTCTGTTGGT ACCGGTGGCG TTGCTGCTGT CCGTGCTGCC GGCATTTGCC
GAAGAGGCGG TGCTGGACAC CGGCGACACG GCCTGGATCA TCGTGGCCAC GGCCCTGGTG
ATGATGATGA CCCCGGCCGG CCTGGCCCTG TTTTACGGGG GCATGTCCCG CAGCAAGAAC
CTGCTCAACA CCTATGCCAT GACCTTTGCC GCCTACTGCC TGGCCAGCCT GGTGTGGGTC
TGCTGGGGCT ATACCCTGGC CTTTGGCCCG GACAAGGGCG GGATCATCGG CGGCCTGGAC
CACCTGTTTT TAAACGGCAT CGGCATTGAC ACCCTGTCCG GCACCATTCC CGCATCGGTG
TTTGTCCTGT TCCAGCTTAC CTTTGCCGGC ATCACCGTGG CCCTGGTGCT GGGATCAGTG
GTGGACCGAA TGAAGTTTTC CGCGTGGATT GTCTTCTGCC TGCTGTGGCT CACCTTTGTC
TACAGCCCGG TGGCCCACTG GGTGTGGGGC GGCGGCTGGA TGGCCGAGAT GGGGGCACTG
GACTTTGCCG GCGGCAACGT GGTGCACATC AACGCGGGTA TTGCCGGCCT GGTGCTGGCC
CTGATGCTGG GAAAACGGGA AGGCTATGGA AAAGTGGCCA TGTTTCCCTC CAGCGTCTCC
TTAACGGCCC TGGGCGCGGC CCTGCTCTGG TTCGGCTGGT TCGGGTTTAA CGCGGGCAGC
GCGCTGGGCG CCAACGGCCT GGCCGGCTCG GCCTTTCTGG TCACCAACAC ATCGGCCGCC
ATGGCCGGCA TGGCGTGGAT GTTTGCCGAA TGGATCGTCA GCAAGCGGCC CACCCTGCTG
GGCCTTGCCT CGGGCGTGGT GGCCGGGCTG GTGGCCATCA CCCCGGCGGC CGGGTTTGTC
AACCTGCCCG CCTCCCTGGT CATCGGCCTG GTGGCCGGGG TCCTGGGATT CTACAGCGTG
GCCGTGCTCA AGCACAAAAT CGGGTATGAC GACTCTTTGG ACGCCTTTGG TGTTCACGGC
GTATGCGGCA TATGGGGCGC CCTGGCCACC GGCCTGTTTG CCAACCCCGC CATTTCCGGG
GCCAGCGGCC TGTTTTACGG CAACCCCGCC CAGCTGGGCA TTCAGGCGAT CTCCATTGTG
GCCACCATTG CCTTTACCGC CGTGGCCACC CTGATTATCG TTTATGTCAC CCGGCTGATC
ACCGGCGGCT TGCGCGTAAG CCGGGAAGAT GAGATGATGG GCCTTGACAA CGCCATTCAC
GGCGAACGGG CCTTTGAGCT GGACTGA
|
|---|
| Protein sequence | MKKILLVPVA LLLSVLPAFA EEAVLDTGDT AWIIVATALV MMMTPAGLAL FYGGMSRSKN
LLNTYAMTFA AYCLASLVWV CWGYTLAFGP DKGGIIGGLD HLFLNGIGID TLSGTIPASV
FVLFQLTFAG ITVALVLGSV VDRMKFSAWI VFCLLWLTFV YSPVAHWVWG GGWMAEMGAL
DFAGGNVVHI NAGIAGLVLA LMLGKREGYG KVAMFPSSVS LTALGAALLW FGWFGFNAGS
ALGANGLAGS AFLVTNTSAA MAGMAWMFAE WIVSKRPTLL GLASGVVAGL VAITPAAGFV
NLPASLVIGL VAGVLGFYSV AVLKHKIGYD DSLDAFGVHG VCGIWGALAT GLFANPAISG
ASGLFYGNPA QLGIQAISIV ATIAFTAVAT LIIVYVTRLI TGGLRVSRED EMMGLDNAIH
GERAFELD
|
|---|
| |