Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dole_0536 |
Symbol | |
ID | 5693358 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfococcus oleovorans Hxd3 |
Kingdom | Bacteria |
Replicon accession | NC_009943 |
Strand | + |
Start bp | 602144 |
End bp | 603961 |
Gene Length | 1818 bp |
Protein Length | 605 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 641263120 |
Product | type II secretion system protein E |
Protein accession | YP_001528423 |
Protein GI | 158520553 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.466146 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCGACG ATTTTGAAAA ACTGTTTGCC CCCAGAAAAG TATGCCAGAT CCTGGTTGCC AGAAAGATGA TCTCAAAGGA AACCGCCGAA GACCTGCTCA AACGGTATGG CGGGGTGAAG TCAAAACTGG AAAAGGCCCA GAGTGCCAGG CTGGCCGCTG CTCCGCCGGG CATAAGGATC AACAATCCCA TCACCATCGT GGATGTGATG GTGTCCATGG GGCTTTCCAG GGCCGACACC GAGGTGGGGG AACTGGATGA GGATGCGGTG TTCCAGGCTC TGGCCGAGGA GTGGGACGTT CCGTTTAAAA AAATAGACCC CCTGAAGCTG GACCTGGAGT TGGTCACCAA CACGATTCCC CGTTCCTTTG CCATGAACTA TCTCTCTTTG CCCATTGCCG TTGAAAACGG TGAGTTGATT GTGGCCACCC CCAACCCGTT CAACACCACG GTAATGGATG ATATTGCCCG GGTGGTACAC CGCAGGGTGG TGCCGGTGGT CAGCACCAAG TCGGACATCA TTCGTACCAT TAACGAGTTT TTTGGTTTTA AAAAATCCAT TGCCGCCGCT GAGACGCAGT TCGCGGCCCC CACCGTGGAC CTGGGCAACC TGGAACAGTA TGTGCGCCTG GCCGGTGAGG GTGAGCTTCC TTTAAATGAC AGCCACATCG TCAACGCGGT CAACCACCTG TTTTCTTACG CACTGGATCA GCATGCCAGT GATATTCATA TTGAGCCCAA GCGGGACATC ACCATGGTGA GAATGCGTAT CGACGGTGTG CTGCACACCA TTTACAAGAT ACCCAAGAAA GTTCACTACG CCCTGGTGAG TCGTATCAAA AACCTGGCGC GCATGGACAT GGCTGAAAAG CGGCGGCCCC AGGACGGTCG CATCAAAACC GACAAAGGGG GCAGTGAGGC GGAGGTTCGG GTCTCCACGA TTCCCGTGGC ATTTGGAGAA AAAGTGGTCA TGCGGATCAT GGACCCGGAC ATCCTGTTTC AGCCGCTGGA GGGCCTGGGT TTTTCCGCCG AGGAGATGAA TATTTACCAG CAGATGGCCA ACCGGCCCAA CGGCATCATC CTGGTGTGCG GTCCCACGGG CAGCGGCAAG TCCACCACCC TTTACTCCAC GCTGCGGTAT CTCTCTACTC CGGACGTCAA TATCACCACC GTGGAAGATC CCATTGAAAT GGTGCATGAG GACTTCAATC AGATTTCGGT TCAGCCGACG GTGGGCATCA CGTTTGGATC AATTCTGAGA AATATTCTTC GTCAGGACCC GGACATCATC ATGATCGGTG AAATGCGGGA CCTGGAAACC GCCCAGAATG CCATTCAGGC CTCGCTGACC GGCCATCTGG TGCTCTCCAC CCTGCACACC AACGACGCTC CTTCTTCTAT CATCCGACTG CTGGATATCG GGGTCCCCAA CTTCCTGGTG CAGGCCACAC TGGTGGGCGT CGTGTCACAG CGCCTGGTGA GACGGATCTG TCCTTACTGC CGGGAACCCA TTGAAATAGA TGCCGCTGAG TTTGAGACCA TGGGCATTCA GACGGGGAAA CGGGGGAAGC TGAAGTTGTA CAAGGGTAAG GGATGCACCA AGTGCAGAGG CACCGGCTAC AAAGGCCGGA CCGGCATTTT TGAGCTGCTG CCATACACGG AAGCCATTCG GGCGTTGACC CTTCCCCAGA CCGATATGGC AAAGATTCAG GCCAAAAGCA GGGAAGAGGG TATGATGACC CTGCGAGAAG CGGCGGTGAA AAAGATGCTG CGGGGTGAAA CTACCTATCA GGAGGTGCTG CGGGTCACCT GGGAATAA
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Protein sequence | MIDDFEKLFA PRKVCQILVA RKMISKETAE DLLKRYGGVK SKLEKAQSAR LAAAPPGIRI NNPITIVDVM VSMGLSRADT EVGELDEDAV FQALAEEWDV PFKKIDPLKL DLELVTNTIP RSFAMNYLSL PIAVENGELI VATPNPFNTT VMDDIARVVH RRVVPVVSTK SDIIRTINEF FGFKKSIAAA ETQFAAPTVD LGNLEQYVRL AGEGELPLND SHIVNAVNHL FSYALDQHAS DIHIEPKRDI TMVRMRIDGV LHTIYKIPKK VHYALVSRIK NLARMDMAEK RRPQDGRIKT DKGGSEAEVR VSTIPVAFGE KVVMRIMDPD ILFQPLEGLG FSAEEMNIYQ QMANRPNGII LVCGPTGSGK STTLYSTLRY LSTPDVNITT VEDPIEMVHE DFNQISVQPT VGITFGSILR NILRQDPDII MIGEMRDLET AQNAIQASLT GHLVLSTLHT NDAPSSIIRL LDIGVPNFLV QATLVGVVSQ RLVRRICPYC REPIEIDAAE FETMGIQTGK RGKLKLYKGK GCTKCRGTGY KGRTGIFELL PYTEAIRALT LPQTDMAKIQ AKSREEGMMT LREAAVKKML RGETTYQEVL RVTWE
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