Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DhcVS_491 |
Symbol | rpoD |
ID | 8657431 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. VS |
Kingdom | Bacteria |
Replicon accession | NC_013552 |
Strand | - |
Start bp | 460468 |
End bp | 462030 |
Gene Length | 1563 bp |
Protein Length | 520 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | |
Product | DNA-directed RNA polymerase sigma subunit (sigma70/sigma32) |
Protein accession | YP_003329973 |
Protein GI | 270307915 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000448627 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCAGCTG AGAAAGATAA GAAGGAATTT AGCCCTGACG ATATCGATGA TGATAAAGAT GTGGAACAGG GGCTGGCTGA TATCCATGAC GAACAGGATG CCGAAGCAGA AAGTGACAAA CTGGTAGAGC CTGACCTCAA AGATATAGCC GATACCGACA TACCGGCCGA ACTAACCGAA GAAGAACTGG CGGCCGAAGC GGATATGATG CCGGACACAG ACGAAGAAAT CGGCCCGCTT AATATTGACC TTGAAATACC CCTTGAGCAG GTTGATACCC AGGGTATCGT AGATGACCCG GTACGCATGT ATCTGCATGA AATCGGCAGG GTACCTTTGC TTTCCGCCGA AGACGAAAAA ACCCTGGCTA AGAAAATGGA AGAAGGCAAA CGCATACGTG AAATCCGTCA GGAGTGCCTT GAAAAACGCG GACGCTACCC CTCGGCTGCG GAATCTTTCC TGTGCATGCT GAGAGAGCTT GCCCAAGCTA CCGAGGTGCT TTTCCAACTG GGGCAGGAAC TAAAGGTGGA TACTTCTGCC AGTCTGAAAA CTATTATCCA CAACCCCAAG CTGAGGGCGG CTATTGACCA TGAGATTGAC CAGCAGCTTA CCAAAAATAT CTCCGATAAT ACCGGCAAGA GCATGGCGGA GATTGAGCAG GCATTTATCA ATCTGGCTAT AAACAGCTCC CTTCTGCCCA AGGTTGTGCT GGATGCCATA CCTGAAAAAA TGACCATACC GGAAATATCA GACCATACCA ACGACCCTGC CTTTATAAGT CACTTGGAAC GGCATGAGGC CAGCCTGAAA TATTATCTGG ATAACCTTGA GATAGATGCC AAACGAGCTG AACGTCACCT TATTCAGGCT AACCTTCGCC TTGTTGTCAG CGTAGCAAAA AAACACATCG GCAGAGGCAT GCCCCTGCTT GACCTAATAC AGGAAGGCAA TATCGGCCTT ATACGGGCAG TGGAAAAATT TGATTTCCAC CGCGGCTTCA AGTTTTCCAC TTACGCCACA TGGTGGATAC GTCAGGCAAT TACCCGGGCT ATTGCAGACC AGGCCAGGAC TATTCGCATA CCTGTCCATA TGGTGGAAAC CATCAACAAG CTGCTGTCCA TAAGCCGGCA GCTGTCACAG AAGCTGGGGC GTGAACCTAC CCCAGATGAG ATAGCCCTTG AAATGGATTT GCCGCCTGAA AAGGTACGTG AAATTGCCAA GGTGTCCCAG CTGCCGGTTT CGCTGGAATC CCCTATAGGC GAAGAGGAAG ATAGTCATCT GGGAGACTTT ATTGAAGACC AGAACGCTCT TGCACCTCCG GATGCTGCTT CGCGCCAGTT GCTCAAAGAG CAGATAGATA CAGTGCTTGG CAGCCTGACC CCGCGTGAAC GCCGGGTACT TCAGCTCCGC TTTGGTCTGG AAGACGGCCG AAGCCGTACA CTGGAAGAAG TGGGCAAAGA ATTTAATGTA ACACGTGAAC GTATCCGCCA GATAGAAGCC AAGGCTCTGC GGAAACTCCG CCACCCCAGC CGCAGCCGCA AACTGAAAGA TTACCTGGAA TAA
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Protein sequence | MPAEKDKKEF SPDDIDDDKD VEQGLADIHD EQDAEAESDK LVEPDLKDIA DTDIPAELTE EELAAEADMM PDTDEEIGPL NIDLEIPLEQ VDTQGIVDDP VRMYLHEIGR VPLLSAEDEK TLAKKMEEGK RIREIRQECL EKRGRYPSAA ESFLCMLREL AQATEVLFQL GQELKVDTSA SLKTIIHNPK LRAAIDHEID QQLTKNISDN TGKSMAEIEQ AFINLAINSS LLPKVVLDAI PEKMTIPEIS DHTNDPAFIS HLERHEASLK YYLDNLEIDA KRAERHLIQA NLRLVVSVAK KHIGRGMPLL DLIQEGNIGL IRAVEKFDFH RGFKFSTYAT WWIRQAITRA IADQARTIRI PVHMVETINK LLSISRQLSQ KLGREPTPDE IALEMDLPPE KVREIAKVSQ LPVSLESPIG EEEDSHLGDF IEDQNALAPP DAASRQLLKE QIDTVLGSLT PRERRVLQLR FGLEDGRSRT LEEVGKEFNV TRERIRQIEA KALRKLRHPS RSRKLKDYLE
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