| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DhcVS_1316 |
|---|
| Symbol | rdhA |
|---|
| ID | 8658241 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. VS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013552 |
|---|
| Strand | - |
|---|
| Start bp | 1213448 |
|---|
| End bp | 1214932 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | |
|---|
| Product | reductive dehalogenase |
|---|
| Protein accession | YP_003330743 |
|---|
| Protein GI | 270308685 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAATT TTCATTCAAC ACTTTCCCGA AGAGATTTTA TGAAGGCTTT GGGTCTGGCT
GGTGCCGGTG TCGGAGCAGT GTCTGCTGCC GCTTCGGTTT TTCATGATGT GGATGAGCTG
ACTGCTTCTT CCGGCGGAGT ACAGAAGCTG CCTTGGTGGG TTAAAGAGCG GGATTTCAAA
GATCCTTCAG TGCCCATTGA CTGGCAGAAT CTGCCCAAGA TGGAAGGTGT TTTCCCCGTA
CAAGCCAAGC CAACCCTGAC GGCTCAGGAA AGATATGCCA TGGGTATCCC CGGCGGCAGT
TCAGGTACTT GGGCCAACCC CGAACAGGCG CAAGTTCTTT TTGATTACAT GAAAAAGGAA
TTTCCGGGCT GGGAACCCGG CTATGCCGGA TTGGGTGATA ACCGGACAAC TGCTCTCTTT
ATGGCTACCA AATTTATGCG TATGGGCTTG TGGCCCGGTG AAATAAATAT GGGTGGCAAA
AGGGTTAATG TTGCTAAGGC TATTTCAGCG GCCGGAGGTA CGCCTACCTT CACCTCATTC
CTGGGTCTCC GCTCCAGTGA AACACTCCGC CCGCAGGATT TTGGTGTACC GCGCTGGGAA
GGCACGCCCG AAGAGAACCT GCTTACCCTG CGTCAGGTAG TCCGTTTCCT TGGCGGCTGT
GATGTGGGTG CTCAGGAACT GGATTCAGAC GTTTTCAAGC TTTTCCATGA GAAAAGCGGC
GGAAAACAGC TGGTGATAGA AAATGTAGAC GAAGCGGCTG AAACCGCAAC CAAGCTGGTC
ATTCCCGCTA AAGCCAAATA CATACTCCAG TGGACTGCCC GCCAGCCATA CGAGTCTACC
AGACGCCAGG CCGGTGAATA TGAAGATGCG GCTGTATACT ACTCCTATCA AAGATTCCCC
TTTGTCGGGG CTATCATTCA GGAGTTTATC CATGCCATGG GTTATACTGC GGTTTCCACC
CATATGTCTG GTTATCATTC TAGTGCCATA GCTACTTTGA CCGGTATGGG AGAACATTGC
CGTATGTCGT CACCCATCTT GGTTCCCAAA TACGGTACTA CCAACCGGGC TATGTGGGTA
ATTATCACCG ATATGCCCCT TATGTCCACT AAACCCATAG ACTTTGGCGT GTATGACTTC
TGCAAGACCT GCGGTATCTG CGCAGACAGC TGTCCGTTCG GCCTTATTGA GAAGGGCGAC
CCGTCCTGGG AAGCTACCCA GCCCGGTACC CGTCCCGGTT TCAACGGCTG GCGTACCAAT
ACCACTACCT GCCCGCATTG TCCGGTCTGC CAGGGCAGCT GCCCCTTTAA TACCAATGGT
GACGGTTCAT TTATACATGA TTTGGTACGT AATACCGTTT CCGTTACTCC TGTTTTCAAC
AGTTTCTTTG CCAATATGGA GAAAACCATG GGTTACGGAC GCAAGGACCC GCGTGATTGG
TGGAATATAG ATGATTATAC CTACGGTATA AATACATCCT ACTAA
|
|---|
| Protein sequence | MSNFHSTLSR RDFMKALGLA GAGVGAVSAA ASVFHDVDEL TASSGGVQKL PWWVKERDFK
DPSVPIDWQN LPKMEGVFPV QAKPTLTAQE RYAMGIPGGS SGTWANPEQA QVLFDYMKKE
FPGWEPGYAG LGDNRTTALF MATKFMRMGL WPGEINMGGK RVNVAKAISA AGGTPTFTSF
LGLRSSETLR PQDFGVPRWE GTPEENLLTL RQVVRFLGGC DVGAQELDSD VFKLFHEKSG
GKQLVIENVD EAAETATKLV IPAKAKYILQ WTARQPYEST RRQAGEYEDA AVYYSYQRFP
FVGAIIQEFI HAMGYTAVST HMSGYHSSAI ATLTGMGEHC RMSSPILVPK YGTTNRAMWV
IITDMPLMST KPIDFGVYDF CKTCGICADS CPFGLIEKGD PSWEATQPGT RPGFNGWRTN
TTTCPHCPVC QGSCPFNTNG DGSFIHDLVR NTVSVTPVFN SFFANMEKTM GYGRKDPRDW
WNIDDYTYGI NTSY
|
|---|
| |