| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_4639 |
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| Symbol | |
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| ID | 7261668 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfitobacterium hafniense DCB-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011830 |
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| Strand | - |
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| Start bp | 4946784 |
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| End bp | 4948508 |
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| Gene Length | 1725 bp |
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| Protein Length | 574 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 643564555 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_002461075 |
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| Protein GI | 219670640 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.215037 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGTCA ATGATCTCAC GACCGGATTT GGCTTCGAAA TTTTTGATTC GATCTATAAC
GGTGTCGTGG CCATTGATCA GCAGGGGATC ATCAAGCTGT TCAATGAAGC GGCGGCCAAG
ATCATGGGAG TTGCGAAGGA AGAGACCATC GGGCGGAGAG TGGAAGAGGT CATTCCTAAT
ACCAGCCTCC TGGAAATATT AAAAACAGGC AAAGCCGAAA ATAATCAAAA GATGCACTTA
GGAAACTGCG AGATCATTTC CAACCGCGGC CCGATCTGCA AAGATGGCAA GATCGTGGGA
GCTATTGGGG TTTTCCAGGA TATATCCGAT TTTGAAGCTT TGTCCCTGGA ATTGGATAAC
GTTAAGGAAA TTAACAATGA CCTGGATGCC ATTATTGAAT CTGTAGCCGA CGGAATCGTC
GTCGGAAGCG CTGATGGCAT GATCTTAAGA GCCAATAGCG CTTACCTGCA GATCACCGGT
ATCCAGGAAA AAGAGTTTGT AGGCAAAAAC GTGCGGGAAC TCATCAACCA AGGATATATG
AATAAATCGG TTACCGAAAT GGTTTTCAGA ACGAAATCCC GGGTCAATGT CGTGGACATC
CGCAGCGGTA AAGAGCTGCT GATGACCGGT GCGCCGGTAT TCAACGAGGA AAAAGAAGTC
ACCCGCGTCG TGACCATTGT CAGGGATATT TCTGAACTTA CGGAACTTAA AGGCAAGCTG
GAACAGGCTG AAGACGCTAA AAACCGTTAT TTGAAAGAGC TGGAGCATTT CCGGTCCCAG
AATGCTTTTA AGAAAATAAT TACCAAAAAT AATGATATGC AAAAAAAGCT GGATACCGCT
TATCATGTAG CCCGGGTGGA TTCAACCGTG CTTATTTTGG GGGAATCCGG CGTCGGAAAA
GAACTGATTG CCCAGCTGAT TCACAGGGCG AGTCATCGCT CTGAGAAACC GTTTATTAAG
ATAAACTGCG GAGCCATACC GGCCAACCTC CTGGAATCGG AGTTTTTTGG CTACGAGGCC
GGTTCCTTCA CAGGTGCCCT TAAAGAAGGG AAAAAAGGAC TGTTCGAGCT TGCGGACGGG
GGAACCTTAT TCCTCGATGA GGTGGGAGAG CTGCCTCTGG AGCACCAGGT CAAAGTCCTG
CGCGCCATTC AGGAAAAAGA AATCCTCCGG GTCGGCGGGA AAAAAACGAT AAAACTGGAT
ATCCGAATTA TCGCGGCAAC CAACCGGGAC CTGGAAGCAA TGATCCGGGA AAAAGCATTC
AGGGAAGATC TGTATTACAG ACTGAATGTT GTTCCCATGA CCATACCTCC TTTGCGCCAG
CGCAAGGAGG ATGTGATCCC CATCGCCTTG GAGTTGTTGG CAAGATATAA TACGGCCTAC
GGTTATCAGA AATGGATTCA CCCGGAAGTG ATGGACTGCT TACTGAATTA TGATTGGCCG
GGAAATATCA GAGAGCTTGA AAATACCATC GAGAGACTGG TGGTGACCAG CATGGACGAC
TGTATTACCA AGGACGCCAT GGCGGAGATC AAGTACATCG ATGTTCACCC TGCCCCAAAT
GGATTAACAT CCCTCAAAGC CTTTCTGGAG AAAGAAGAAA ACCGCCTGCT GGAAGAGGCC
TACCGTCTGA TGGGCAGTAC AAGGAAAGCT GCCGCAGTGC TGGGGATCAG CCAATCAAGC
ATGGTCAAAA AGATGAAAAA ATATGGCATT GAAATACAAA ACTGA
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| Protein sequence | MDVNDLTTGF GFEIFDSIYN GVVAIDQQGI IKLFNEAAAK IMGVAKEETI GRRVEEVIPN
TSLLEILKTG KAENNQKMHL GNCEIISNRG PICKDGKIVG AIGVFQDISD FEALSLELDN
VKEINNDLDA IIESVADGIV VGSADGMILR ANSAYLQITG IQEKEFVGKN VRELINQGYM
NKSVTEMVFR TKSRVNVVDI RSGKELLMTG APVFNEEKEV TRVVTIVRDI SELTELKGKL
EQAEDAKNRY LKELEHFRSQ NAFKKIITKN NDMQKKLDTA YHVARVDSTV LILGESGVGK
ELIAQLIHRA SHRSEKPFIK INCGAIPANL LESEFFGYEA GSFTGALKEG KKGLFELADG
GTLFLDEVGE LPLEHQVKVL RAIQEKEILR VGGKKTIKLD IRIIAATNRD LEAMIREKAF
REDLYYRLNV VPMTIPPLRQ RKEDVIPIAL ELLARYNTAY GYQKWIHPEV MDCLLNYDWP
GNIRELENTI ERLVVTSMDD CITKDAMAEI KYIDVHPAPN GLTSLKAFLE KEENRLLEEA
YRLMGSTRKA AAVLGISQSS MVKKMKKYGI EIQN
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