| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_3979 |
|---|
| Symbol | |
|---|
| ID | 7260999 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | + |
|---|
| Start bp | 4231025 |
|---|
| End bp | 4232071 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 643563900 |
|---|
| Product | two component transcriptional regulator, AraC family |
|---|
| Protein accession | YP_002460428 |
|---|
| Protein GI | 219669993 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins
[COG4753] Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATACAG TATTAGTCGC TGATGACAAA GAGGTCTTCA GAAGAAAAGT CAAGCGTATG
CCTTACTTCC AGGACCACAA GGAGAAATTC GCAATCAGGT ACGAAGCGCA GAACGGCCTG
GAAGCGCTGG AAATTCTGCG CAGCCATGAC GTGGATATGG TATTGACGGA TATCCGGATG
CCCTTTATCG ACGGGATCGA GCTTCTGAAA CATGTCAACG CCGAAAATCT GTGCAAATGC
GTCATTTTAT TGAGTGAATT CGCGGAGTTC AACTACGCCA AAGCAGGTAT CCTGAACGGC
GCTTTTGATT ATGTCCTGAA ACCTGTCGAT GATGAGAAAA TTCAGGAAAC CTTTGACCGG
GCCTATAACT ATCTGACGAC GATCAACGCG GCGGTGAACG CCCAAACCCA GAGAATAGAG
ACACTGGCCC GGCTTATGCT TGCCGGCGAC CGGATGAACG CGCTGGCCTA CGCCAAACAT
ATTGGGGCGG GGTTACAGGC CCATGGGGCA ATCACCGGAG AACGCATCGT GCAGGCCAAC
GATACCCTGG CACAGTTAAA CAAGTACATT TTGCAGAAAC GCCCCTTTTT GCACTATTAT
CTTCCTTTTG ACGAGCTCTG CTGCCTTGAC GCCAAAAAGA CAACGCCCGG AAAGATTTCT
GACGCTTTCA ATGCATGTGT TTCGACTGTT ATGGACGCCA TCGAGCCTTT TTGCGTACAG
TCCACAAACG AGCTGGTAGG CAGGACCTGT CAGCTCGTGC TTGAAAAGCT GGATAGCAAA
GTCAGTCTGC ATGGCATCGC CGACAACCTA TATGTCAACC CCAAATACCT TGGCGCACTC
TTCAAGAAAG AAACAGGGAG GAGCTTTGTC GATTACGTTA CCTTTGCCAG GATGGAACGG
GCGAAAATGC TCCTGCGCAA TCCGACGCTG AAAGTTTACG AAGTAGCCGC TCAGCTCGGA
TACGATGACG TGGATTATTT CAGCAAGGTT TTTAAAAAGC TGACCGCTGA ATCACCCAGT
ATTTACAGGG AGATGAGAAA ACAATGA
|
|---|
| Protein sequence | MYTVLVADDK EVFRRKVKRM PYFQDHKEKF AIRYEAQNGL EALEILRSHD VDMVLTDIRM
PFIDGIELLK HVNAENLCKC VILLSEFAEF NYAKAGILNG AFDYVLKPVD DEKIQETFDR
AYNYLTTINA AVNAQTQRIE TLARLMLAGD RMNALAYAKH IGAGLQAHGA ITGERIVQAN
DTLAQLNKYI LQKRPFLHYY LPFDELCCLD AKKTTPGKIS DAFNACVSTV MDAIEPFCVQ
STNELVGRTC QLVLEKLDSK VSLHGIADNL YVNPKYLGAL FKKETGRSFV DYVTFARMER
AKMLLRNPTL KVYEVAAQLG YDDVDYFSKV FKKLTAESPS IYREMRKQ
|
|---|
| |