Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dhaf_3555 |
Symbol | |
ID | 7260573 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfitobacterium hafniense DCB-2 |
Kingdom | Bacteria |
Replicon accession | NC_011830 |
Strand | - |
Start bp | 3778471 |
End bp | 3780192 |
Gene Length | 1722 bp |
Protein Length | 573 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 643563478 |
Product | type II secretion system protein E |
Protein accession | YP_002460009 |
Protein GI | 219669574 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | [TIGR02533] general secretory pathway protein E [TIGR02538] type IV-A pilus assembly ATPase PilB |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.422315 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGGCTATCC GACAAGAACG CAAGCGCCTT GGCGAAATTC TCATTGCCGG TGGCGCGCTG ATGGAAGAAC AGCTTAATGA AGCACTGAAG CTGCAAAAAT CCCTGGGGCT GCGCCTTGGC GAAGTTCTCA TCCGTCAAAA TTTTGTCTCA GAAGAAGAAA TCCTTCGCAC TATCCAGAGG CAATTGGGCC TCCCTGCGGT TGACCTTAAC CGAATTTTCG TCACGGAGAA AATTCTAAAA ATGATCCCTG AGTCGGTCGC CCGCAAATAT ACCGTTTTGC CGGTGGATTT TACGAATGGG CAACTACTTG TTGCCACAAG CGATCCGACG GATTATTATG CCATCGATGA CCTTCGCTTG GCCTCCGGGA TGATGGTCAA GCCTTGTGTG GCCAGAAAAG CGGATATTCT CCGGGCAATT GACCGTTTCT ACGGTCGCAG TGAGGCGGAA AAAGCGGTTA GCGATTTTGT CAGACAGAAG GGCCACGATC AAGTGGCGGC CGCCGCTCAA ACTCCTGTCT TGACGGTGGT GCAGGCCGGA GGGGAGACGG CGGATGAAGA GGCCACCCCC ATCATTAAGT TTCTGAACAC GATTATTGAG AATGCGGTCA ATAACTTTGC CAGCGATATT CATATCGAAC CTGTGGATGA TGAGCTGAGG GTTCGTTTCC GCATTGACGG GGTCCTCCGG GAGATTATGC GCACTCCTGT AGGGATGACC GGGCCGGTGG TGAGCCGGGT TAAGATTATG GCGGATCTCA ACATCGCCGA ACGGCGGCTT CCTCAGGATG GGCGGATCAC CTATCTGGTG GGCAGGAAGA TGATCGACCT GCGGGTTTCC ACGGCACCGA CCATGTATGG AGAAAAGGTG GTGCTGCGTA TTCTGGATAA GGGTTCGGTG ATCCTAGAAA AGGCCTCCCT TGGCCTTCAA GGCCATAATC TGGAGCTTTT TGATGAACTG ATTGCGAAGC CATACGGTAT CGTGCTGGTT ACCGGCCCTA CAGGAAGCGG TAAAACCACC ACCTTATATA CGGCACTGAA TCAGCTGAAC ACCCCGGAGA AGAACATCAT CACGTTGGAA GATCCGGTGG AATATAATTT TAAAGGGGTC AATCAAATGC AGGTTAATCC CAAGGCTGGG TTGACCTTTG CCAAGGGCTT GCGTTCCATT CTCCGTCAGG ACCCGGATAT CATCATGGTG GGAGAGATGC GGGACAACGA AACTGCCGAG ATCGCGGTGA GATCGGCCTT GACAGGTCAT CTTGTCCTGT CCACGATTCA TACTAATGAT GCTCCCAGTG CGGTGACCCG CCTGGTGGAT ATGGAGATCG AGCCTTTTCT TATTTCTGCT TCGGTAGTTG GAATTATATC CCAACGTTTG GTGCGCAAGA TTTGTCCCAA TTGTGTCCAG GAATACCCGG CAGAGCTCAA AGACTATGCC TTTTTAGGAC TCTCTCAGGA TTTCCCCTTA AAGCTGAGAC GGGGAACCGG ATGCCCCTAT TGCCATGATT CAGGCTATAA AGGCCGTACC GCTATTTTCG AGATTATGCC CATCTACGGC GGACATAGAA ATCTGATTAG CAGAGGGGCC ACAGCCGACG AATTGCGGGA ATATGCCATC AGTCAAGGGA TGATTACACT GAAAAAATCA GCGACGGATC TGGTGCTCAA TGGGGTGACG ACCATCGAAG AGCTTCTCCG CGTTACTTAT GTCAATGAAT GA
|
Protein sequence | MAIRQERKRL GEILIAGGAL MEEQLNEALK LQKSLGLRLG EVLIRQNFVS EEEILRTIQR QLGLPAVDLN RIFVTEKILK MIPESVARKY TVLPVDFTNG QLLVATSDPT DYYAIDDLRL ASGMMVKPCV ARKADILRAI DRFYGRSEAE KAVSDFVRQK GHDQVAAAAQ TPVLTVVQAG GETADEEATP IIKFLNTIIE NAVNNFASDI HIEPVDDELR VRFRIDGVLR EIMRTPVGMT GPVVSRVKIM ADLNIAERRL PQDGRITYLV GRKMIDLRVS TAPTMYGEKV VLRILDKGSV ILEKASLGLQ GHNLELFDEL IAKPYGIVLV TGPTGSGKTT TLYTALNQLN TPEKNIITLE DPVEYNFKGV NQMQVNPKAG LTFAKGLRSI LRQDPDIIMV GEMRDNETAE IAVRSALTGH LVLSTIHTND APSAVTRLVD MEIEPFLISA SVVGIISQRL VRKICPNCVQ EYPAELKDYA FLGLSQDFPL KLRRGTGCPY CHDSGYKGRT AIFEIMPIYG GHRNLISRGA TADELREYAI SQGMITLKKS ATDLVLNGVT TIEELLRVTY VNE
|
| |