Gene Dhaf_3555 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_3555 
Symbol 
ID7260573 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand
Start bp3778471 
End bp3780192 
Gene Length1722 bp 
Protein Length573 aa 
Translation table11 
GC content52% 
IMG OID643563478 
Producttype II secretion system protein E 
Protein accessionYP_002460009 
Protein GI219669574 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID[TIGR02533] general secretory pathway protein E
[TIGR02538] type IV-A pilus assembly ATPase PilB 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.422315 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGCTATCC GACAAGAACG CAAGCGCCTT GGCGAAATTC TCATTGCCGG TGGCGCGCTG 
ATGGAAGAAC AGCTTAATGA AGCACTGAAG CTGCAAAAAT CCCTGGGGCT GCGCCTTGGC
GAAGTTCTCA TCCGTCAAAA TTTTGTCTCA GAAGAAGAAA TCCTTCGCAC TATCCAGAGG
CAATTGGGCC TCCCTGCGGT TGACCTTAAC CGAATTTTCG TCACGGAGAA AATTCTAAAA
ATGATCCCTG AGTCGGTCGC CCGCAAATAT ACCGTTTTGC CGGTGGATTT TACGAATGGG
CAACTACTTG TTGCCACAAG CGATCCGACG GATTATTATG CCATCGATGA CCTTCGCTTG
GCCTCCGGGA TGATGGTCAA GCCTTGTGTG GCCAGAAAAG CGGATATTCT CCGGGCAATT
GACCGTTTCT ACGGTCGCAG TGAGGCGGAA AAAGCGGTTA GCGATTTTGT CAGACAGAAG
GGCCACGATC AAGTGGCGGC CGCCGCTCAA ACTCCTGTCT TGACGGTGGT GCAGGCCGGA
GGGGAGACGG CGGATGAAGA GGCCACCCCC ATCATTAAGT TTCTGAACAC GATTATTGAG
AATGCGGTCA ATAACTTTGC CAGCGATATT CATATCGAAC CTGTGGATGA TGAGCTGAGG
GTTCGTTTCC GCATTGACGG GGTCCTCCGG GAGATTATGC GCACTCCTGT AGGGATGACC
GGGCCGGTGG TGAGCCGGGT TAAGATTATG GCGGATCTCA ACATCGCCGA ACGGCGGCTT
CCTCAGGATG GGCGGATCAC CTATCTGGTG GGCAGGAAGA TGATCGACCT GCGGGTTTCC
ACGGCACCGA CCATGTATGG AGAAAAGGTG GTGCTGCGTA TTCTGGATAA GGGTTCGGTG
ATCCTAGAAA AGGCCTCCCT TGGCCTTCAA GGCCATAATC TGGAGCTTTT TGATGAACTG
ATTGCGAAGC CATACGGTAT CGTGCTGGTT ACCGGCCCTA CAGGAAGCGG TAAAACCACC
ACCTTATATA CGGCACTGAA TCAGCTGAAC ACCCCGGAGA AGAACATCAT CACGTTGGAA
GATCCGGTGG AATATAATTT TAAAGGGGTC AATCAAATGC AGGTTAATCC CAAGGCTGGG
TTGACCTTTG CCAAGGGCTT GCGTTCCATT CTCCGTCAGG ACCCGGATAT CATCATGGTG
GGAGAGATGC GGGACAACGA AACTGCCGAG ATCGCGGTGA GATCGGCCTT GACAGGTCAT
CTTGTCCTGT CCACGATTCA TACTAATGAT GCTCCCAGTG CGGTGACCCG CCTGGTGGAT
ATGGAGATCG AGCCTTTTCT TATTTCTGCT TCGGTAGTTG GAATTATATC CCAACGTTTG
GTGCGCAAGA TTTGTCCCAA TTGTGTCCAG GAATACCCGG CAGAGCTCAA AGACTATGCC
TTTTTAGGAC TCTCTCAGGA TTTCCCCTTA AAGCTGAGAC GGGGAACCGG ATGCCCCTAT
TGCCATGATT CAGGCTATAA AGGCCGTACC GCTATTTTCG AGATTATGCC CATCTACGGC
GGACATAGAA ATCTGATTAG CAGAGGGGCC ACAGCCGACG AATTGCGGGA ATATGCCATC
AGTCAAGGGA TGATTACACT GAAAAAATCA GCGACGGATC TGGTGCTCAA TGGGGTGACG
ACCATCGAAG AGCTTCTCCG CGTTACTTAT GTCAATGAAT GA
 
Protein sequence
MAIRQERKRL GEILIAGGAL MEEQLNEALK LQKSLGLRLG EVLIRQNFVS EEEILRTIQR 
QLGLPAVDLN RIFVTEKILK MIPESVARKY TVLPVDFTNG QLLVATSDPT DYYAIDDLRL
ASGMMVKPCV ARKADILRAI DRFYGRSEAE KAVSDFVRQK GHDQVAAAAQ TPVLTVVQAG
GETADEEATP IIKFLNTIIE NAVNNFASDI HIEPVDDELR VRFRIDGVLR EIMRTPVGMT
GPVVSRVKIM ADLNIAERRL PQDGRITYLV GRKMIDLRVS TAPTMYGEKV VLRILDKGSV
ILEKASLGLQ GHNLELFDEL IAKPYGIVLV TGPTGSGKTT TLYTALNQLN TPEKNIITLE
DPVEYNFKGV NQMQVNPKAG LTFAKGLRSI LRQDPDIIMV GEMRDNETAE IAVRSALTGH
LVLSTIHTND APSAVTRLVD MEIEPFLISA SVVGIISQRL VRKICPNCVQ EYPAELKDYA
FLGLSQDFPL KLRRGTGCPY CHDSGYKGRT AIFEIMPIYG GHRNLISRGA TADELREYAI
SQGMITLKKS ATDLVLNGVT TIEELLRVTY VNE