Gene Dhaf_1686 details

Gene Information

• Locus tag: Dhaf_1686
• ID: 7258655
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfitobacterium hafniense DCB-2
• Kingdom: Bacteria
• Replicon accession: NC_011830
• Strand: -
• Start bp: 1799253
• End bp: 1801115
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 643561588
• Product: drug resistance transporter, EmrB/QacA subfamily
• Protein accession: YP_002458168
• Protein GI: 219667733
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG2814] Arabinose efflux permease
• TIGRFAM ID: [TIGR00711] drug resistance transporter, EmrB/QacA subfamily

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.892029
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACAAAC AAGCAAAAAT AACCGCTGTA GTTCTAATGC TCGGCGCATT TATTTCCGTA 
CTTAACCAAA CTCTCATTAA TCCTGCCTTG CCGACGATTA TGGAAGAACT CCACATTGAA 
GCAACGACAG CCCAGTGGCT CGTATCAGGA TTTACCCTCG TCAACGCCAT CGTTATCGCC 
ATATCCGCAT TTTTAATGGA TAGATTCCGG ACGAAACAAC TCTTCCTCTC TATTTTTGTC 
CTGTTTCTCG CCGGGAGCCT GCTGGCCTCC TGGGGAGTGA ATTTTACTGT TTTGCTCATA 
GGGCGTTTAC TGCAAGCCAT ATGCGCGGGG ATCATGATGC CGCTGTCCAT GACCATAATA 
CTTCTCTTGT TCCCCCACGA AAAACGCGGC TCAGCTATGG GCATGTACAG CTTGGTCATT 
ATGGTTGCGC CTGCCATTGG ACCTGTCTTG GCAGGAGTGC TTACCGATAA AGTCGGTTGG 
CGGATTATGT TCCTTGTCAT GGCGGTGCTT GCAGGGGCGA TAATATTGCT GGCCTCGCTG 
ATCATGAAAA ATTACGGTGA TGTAAAACAA ACAACCCTTG ATAAACCATC CTTCACGATG 
GCTTCCCTCG GCTTATTGGC CTTATTGTAC GGTTTTTCCC TGTTAGGGAA TATATCCATG 
ATTTTAACCG CTTCCGCTTT AGTTCTCGCT GGGGTCGTGA TTCTGTTTCT GTTTGTCCGC 
AGGCAATTAA GCCTTACGCA ACCCTTCTTG CAGATTAAAG TCCTTGGCAA TGCTCAATAC 
CGCAACGGTA CGATAATTTT AATGCTTATC CAGGCTTCCC TCGCCGCAGC AACCATTACC 
TTGCCGATCT ACATCCAAAC CGTACGGGGA ATGTCCGCCA CCGTTTCGGG TATGGTCATG 
ATGCCGGGTG CAATTTTGGG AGCTGTATTT GGCTATTTTG CAGGAAAGCT CTACGATGCC 
TTCGGCGCAA GATATGTCGG ACTTTTCGGC GGGTTTTTGC TGCTTCTCGG TTCTTTAGGC 
ATGGCATTAT TTGATTTTGA TACGACAATT GGGTTTATGA CAGCCGCTTA CACCTTGCGC 
TCCGTCGGGC TTATGCTAGC CAACACCCCC ATCAATATGT GGTCTATAAA GAAGCTGCCG 
GATGAAATTC TCCACCATGG GAACGCCGTC GGAATCACCC TTCGTCAAGT TGCCACAACC 
CTTTGCACTG CAGTCATGGT CTCCGTAATG TCGTTCGCCT CTTCGGTATA TGCCGCAAAA 
GGGGAAATAC AGTCACAGAT GTACGGTATT AGCATGACTT ACTGGTTAAG CGTCGTTATC 
GGGCTTGTTG CGCTTATTTT GGTAGCCGTC AAGGTAAAAA ACAGGAAAAA AACCGTCGCA 
GCCGTCACCG AAGCCGTTTA CGAACTTGAT ATAGCTATGA GAGCCGACCC TTACACGGTT 
TCCTGTGATG ATAATCTGAA GCAGGTTGTC GAAAAGTTCA TAGGTTACAA AACAAGCGGA 
TTGCCGATTA TTGATGCGCA GAAACACTTA ATCGGATTTG TTTCGGACGG CGATGTTATG 
CGGTATTTCA CCAAACAAGA CCTACGATTT GTCGCCGAAT TCTATTCAGC CGTTATTCCC 
GATACGGACA CTCTTAACTC CAAAGCGAGA AAGCTGTTAA GCATGAATGT CATGGAGATC 
GCTTCCCCAA ATGCTATTGC CGTTTCACAT GACACACCGC TTCTTGAAGT CTGTGAGATA 
TTCAGCAGAC GTAAGATAAA CAAACTTCCT GTAACTCAAA ACGACATCCT CATTGGTACG 
ATCAGCAGAG GCGATATTAT GCGGGCTTTG ATGACCCGGT TGCCATTGGG TGGCGAAGAT 
TGA 

 

Protein sequence

MNKQAKITAV VLMLGAFISV LNQTLINPAL PTIMEELHIE ATTAQWLVSG FTLVNAIVIA 
ISAFLMDRFR TKQLFLSIFV LFLAGSLLAS WGVNFTVLLI GRLLQAICAG IMMPLSMTII 
LLLFPHEKRG SAMGMYSLVI MVAPAIGPVL AGVLTDKVGW RIMFLVMAVL AGAIILLASL 
IMKNYGDVKQ TTLDKPSFTM ASLGLLALLY GFSLLGNISM ILTASALVLA GVVILFLFVR 
RQLSLTQPFL QIKVLGNAQY RNGTIILMLI QASLAAATIT LPIYIQTVRG MSATVSGMVM 
MPGAILGAVF GYFAGKLYDA FGARYVGLFG GFLLLLGSLG MALFDFDTTI GFMTAAYTLR 
SVGLMLANTP INMWSIKKLP DEILHHGNAV GITLRQVATT LCTAVMVSVM SFASSVYAAK 
GEIQSQMYGI SMTYWLSVVI GLVALILVAV KVKNRKKTVA AVTEAVYELD IAMRADPYTV 
SCDDNLKQVV EKFIGYKTSG LPIIDAQKHL IGFVSDGDVM RYFTKQDLRF VAEFYSAVIP 
DTDTLNSKAR KLLSMNVMEI ASPNAIAVSH DTPLLEVCEI FSRRKINKLP VTQNDILIGT 
ISRGDIMRAL MTRLPLGGED