| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_1011 |
|---|
| Symbol | |
|---|
| ID | 7257979 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | - |
|---|
| Start bp | 1098228 |
|---|
| End bp | 1102571 |
|---|
| Gene Length | 4344 bp |
|---|
| Protein Length | 1447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 643560925 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_002457507 |
|---|
| Protein GI | 219667072 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
|---|
| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01405] DNA polymerase III, alpha chain, Gram-positive type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.939055 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAG TTCAGGAGAT TTTCAGGAAT TTTGAAGCTG GGGTCAGCTT AAACACAGCT
ATCGTCAAAG CCGTGGTGCT GAAAGAGAAG AGCAAGACCC TGGAAATGAA GATCAGCTCG
GATAACTATA TAGAGGTCAG CGACCTTGAA TCTCTGAATC AATTTATAAG AGAACAATTG
ACTTTAGAGG ATTCTGAGAT TATCGTCGAG TACTCTGAGG GTACTCCCAA AAAGCCCATC
GAAGAGGAGC TCAAGAAAAT CATCAGCTTG CTGGCCCGCA AACATCCTCT TTTGAAATCT
GCCCTCAATA ATTGCGACTT CGACATCACG GATCAATCCA TACAGCTTAC CTTTAAGATT
GCTGTTTCTT ACTTACTCAA AGGCAAGGGC TATGACAAGA TCATTCAAGA GGCGATTAAA
AACCTCTATG GTGCCCATTA TACCGTTCAT TTCGCCGATA AAGTCAACCC TGAAGATTTA
GTCCGGCTGC AAGAGGCTAC CCAGGAAAAA GAACTTCAGC TGATTCAAAA AGAGAGGCTG
GCGGTCCCCC CTAGTCCAAC CCCTGCCGAA CGCCCTAAAG AGGCTGCACC TGTGCCGGCG
GAGAGCAAAG CTGATGATGG CAAAAAAAGC GATCCCCAGC TTATTTTGGG CCGTAATGCC
GCCATTAAAG ATAAGGTCAT CAAAGTTACC GACATTACCC CCGATGAAGG CAAGATTGCT
CTTCAAGGGG AACTGTCCAA TATCGAAGCC AAAGAATTAA AAAGCGGCAA AACTTTAGTG
TCCTTTGATC TCTATGACGG CTCAAGCTCC ATCACCTGTA AGTCCTTCCT CAAACCCGGT
GAAGACAGTG AGGTCGTATC CAGACTGCAG AAGGCTAAAG GAGTTAAGCT TTCCGGAAAT
GCCGGCTTCA GCAAGTTCTC CGGGGAAATA GAGGTCATCG CCCACACCAT CGTGGAAACA
GAAGGTGTAA AAAAATATAT ACGACAGGAT CTGGCCAAGG CCAAACGGGT GGAGCTGCAC
CTGCATACCC AAATGAGCCA GATGGATGCC ATGAGCGGTG CCACGGATCT CATCAAACGG
GCCATGAACT GGGGGATGAA AGCCATTGCC ATTACCGATC ATGGTGTGGT TCAGTCTTTC
CCGGAAGCTC ATAAACTCCT GGGCAGAGAT AATCCCAATA TGAAGGTCAT CTATGGCGTG
GAAGCTTATT TGGCACCGGA TAAGAAACCC TCCGTAACCC ATCCTAAAGG CCAGAGTATT
GATACTACCT ATTGTGTACT GGACCTGGAA ACCACCGGCT TCTCAGCCGC CACCGAAAAG
ATCACGGAAA TCGGGATCAT GAAGATCCAA GGGGGCAAGA TCATCGATCA ATTCGGCTGT
TTTGTCAATC CGGAGAAACC CATCCCCGCC CGGGTCGTGG AGGTAACCAA CATCACCGAT
GACATGGTCA GGGACGCTGA GACCATCGAC CAGGTTTTTC CTAAAATCCT GAATTTTATC
GAAGGAAGCG TTTTGGTTGC TCATAATGCT GATTTTGATA TGGGCTTCCT GAAGCACAAC
GCGAAAGTCT TAGGCTATGA TTTTGACTAT ACCTATTTGG ATACCCTGTC CTTAGCCAAG
GAACTTTTCC CGGATTACAA AACCTATAAA CTAGGGAGAA TTGCCAAGAA TCTAGGCATT
AAAGTCGAGG TCGCTCACCG GGCCCTCGAT GATGTGGGCA CCACCGTTAA GGTGTTCAAT
ATCATGGTAG ACATGCTTAA AGAGCGGGGG GTAGAGACCC TTGAGGACAT TGACCTGAAG
GCGGCGGATG AGGCGGCCAG GAAAGATGAA TATAAAAAGC TTAAGACCTA TCATGCTATT
ATTTTAGCTA AGGATTATAC CGGGCTCAAA AACTTATATA AGCTGGTCTC CTATTCTCAT
CTTGACTATT TTTATAAAAA ACCCCGTATC TTGAAGAGTC TCTATAAAAA GTACTCAGAA
GGCTTAATTC TCGGCAGTGC CTGCAGTGAA GGGGAGCTTT ATCAAGCCAT CCTGCTGGGC
CGCTCGGAGG AGGAAATCGA GTCCATCGCC GAAGAATACG ATTATCTGGA GATCCAGCCT
CTGGGGAATA ATGATTACCT GATTAGAACC GAGCAGGTGC CGGGTAAAGA CTATCTCATG
GAGATCAATC GCAAGATTGT CGCCTTGGGC GAGAAACTCA ACAAACCTGT CGTAGCCACA
GGGGATGTGC ATTTTCTGGA TCCCGAAGAT GAAATCTACC GGCGGATCCT GGAAGCAGGC
CAGGGCTTCA AGGATGCGGA TCAGCAGCCT CCCCTCTATC TGAAAACCAC AGAAGAGATG
CTGGAGGAAT TTTCCTATTT GGGAGAAGAC AAAGCCTATG AAGTGGTGGT CACCAACACC
AATCTGATCG CCGATCTCTG TGAGCCCATC AGCCCTATTT CCTCGGAAAA AGCTACTCCC
CATATTGAGG GCTGTGAGGA GACCATTAAG GAGATTGCCT TTGGCAAGGC TCACGAGCTC
TATGGGAACC CTTTGCCGGA CATCGTTCAG CAAAGGCTGG ACAGGGAGCT GGATTCCATC
ATCAAAAACG GCTTCTCCGT GATGTATATC ATCGCCCAAA AACTGGTCTG GAAATCCAAC
GAAGACGGCT ATCTGGTTGG GTCCCGGGGT TCTGTGGGGT CATCTGTCGC CGCCTATATG
ACAGGCATCA CCGAGGTCAA TGCCCTGCCC CCTCACTACC GCTGCCCCAG CTGCAAATAC
TCGGATTTCT CCGATCATGG TCCTAAGATC GGCTTTGATT TGCCGGATAG AGAATGCCCC
GTCTGCGGAA CCCAGCTGGA TAAGGACGGC ATCGATATTC CCTTTGAAAC CTTCCTGGGC
TTCAACGGGG ATAAAGAGCC GGATATCGAC TTAAACTTCT CAGGAGAGTA CCAGGCTAAA
GCCCACAAAT ACACCGAGGT TATCTTCGGT AAAGGCACCA CCTTCAAAGC GGGAACCATC
GGCACCATCG CTGATAAGAC GGCCTTTGGC TATGTAAGGA AGTATTTTGA GGAAAAGAAC
CGGACTGCCA ATAAAGCGGA AATCATCCGC ATCTCCAAAG GCTGCACAGG CATTAAACGA
ACCTCGGGAC AGCATCCGGG GGGCATCATC GTGGTGCCCA AAGGCCGGGA AATCTTTGAG
TTCTGCCCTG TACAGCATCC TGCCGACGAC CCCAATTCAG ATATCATCAC CACCCATTTT
GACTACCACT CCATTGACCA GAATCTTTTA AAGCTGGATA TTCTGGGCCA CGATGATCCC
ACGGTGATCC GCATGCTTCA GGATATTACC GGAGTCGATC CGAAAACCAT TCCCATGGAC
GATAAGAAGA CCATGTCTCT CTTCTCCTCC ACAGAAGCCT TGGGTGTAAC CCCCGAACAG
ATCAACTCCA AGGTGGGGAC CTTCGGCATT CCTGAATTCG GTACCCGCTT CGTCCGGGGC
ATGCTCCTGG ATACTCTGCC TAAGGCCTTC GAAGACTTAA TCTGCATCTC CGGTCTCTCC
CACGGAACCG ATGTGTGGCT GGGGAATGCC AAGGACTTGA TCGATGCGGG AACGGTGACC
CTGAGCGAGG CGGTCTGTAC CCGTGACGAG ATTATGACCT ATCTCATTCG CAAGGGCCTC
CCTCCCAACA CAGCCTTTAA AATTATGGAA ATAGTGCGTA AAGGTAAAGC CCTTAAAGAG
CCTAAATGGC CGGAGTACGA AACCTTAATG AGAGAGCACG ATGTTCCCGA ATGGTACATT
GACTCCTGCC GCAAGATCAA GTACATGTTC CCTAAAGCCC ATGCCGCAGC CTATGTGATG
ATGGCCTTCC GTATCGCTTG GTTTAAGGTG CATATTCCCT TGGCCTATTA CGCAGCCTAT
TTCACCATTC GTGCCAAAGC TTTTGACGCC GAATTTATGA TCTTCGGCAA AGAAAAGGTC
AAGGCAAAAA TGAAAGAGAT TGAGGCCCTG GGCAATCAAG CGGCACCCAA GGATAAGGAT
ATGTACGATG ATTTGGAAAT CGTTTTGGAG ATGTATGAGA GGGGCTTCTC CTTCCTGCCC
ATAGATATCT ACGCATCCCA TGCTACAAAA TTCCAGGTGG AGGGTAATGC TTTAAGACCC
CCTCTTAACA GCATCTCCGG CATGGGAACC ATCGCTGCTG AAGGACTCTA CAACGCCGCT
CAGGAAAAAC CTTTCAACTC CCTGGAGGAT GTCAAGAAAC GGGGCAAAAT CGGGAATTCT
ACCATGGAAT TGCTGAGTAA ATTTGATTGC TTAAAAGGCA TACCGGAAAG CGATCAGATC
AGTTTCTTTG ATCTAATCAG TTAA
|
|---|
| Protein sequence | MKRVQEIFRN FEAGVSLNTA IVKAVVLKEK SKTLEMKISS DNYIEVSDLE SLNQFIREQL
TLEDSEIIVE YSEGTPKKPI EEELKKIISL LARKHPLLKS ALNNCDFDIT DQSIQLTFKI
AVSYLLKGKG YDKIIQEAIK NLYGAHYTVH FADKVNPEDL VRLQEATQEK ELQLIQKERL
AVPPSPTPAE RPKEAAPVPA ESKADDGKKS DPQLILGRNA AIKDKVIKVT DITPDEGKIA
LQGELSNIEA KELKSGKTLV SFDLYDGSSS ITCKSFLKPG EDSEVVSRLQ KAKGVKLSGN
AGFSKFSGEI EVIAHTIVET EGVKKYIRQD LAKAKRVELH LHTQMSQMDA MSGATDLIKR
AMNWGMKAIA ITDHGVVQSF PEAHKLLGRD NPNMKVIYGV EAYLAPDKKP SVTHPKGQSI
DTTYCVLDLE TTGFSAATEK ITEIGIMKIQ GGKIIDQFGC FVNPEKPIPA RVVEVTNITD
DMVRDAETID QVFPKILNFI EGSVLVAHNA DFDMGFLKHN AKVLGYDFDY TYLDTLSLAK
ELFPDYKTYK LGRIAKNLGI KVEVAHRALD DVGTTVKVFN IMVDMLKERG VETLEDIDLK
AADEAARKDE YKKLKTYHAI ILAKDYTGLK NLYKLVSYSH LDYFYKKPRI LKSLYKKYSE
GLILGSACSE GELYQAILLG RSEEEIESIA EEYDYLEIQP LGNNDYLIRT EQVPGKDYLM
EINRKIVALG EKLNKPVVAT GDVHFLDPED EIYRRILEAG QGFKDADQQP PLYLKTTEEM
LEEFSYLGED KAYEVVVTNT NLIADLCEPI SPISSEKATP HIEGCEETIK EIAFGKAHEL
YGNPLPDIVQ QRLDRELDSI IKNGFSVMYI IAQKLVWKSN EDGYLVGSRG SVGSSVAAYM
TGITEVNALP PHYRCPSCKY SDFSDHGPKI GFDLPDRECP VCGTQLDKDG IDIPFETFLG
FNGDKEPDID LNFSGEYQAK AHKYTEVIFG KGTTFKAGTI GTIADKTAFG YVRKYFEEKN
RTANKAEIIR ISKGCTGIKR TSGQHPGGII VVPKGREIFE FCPVQHPADD PNSDIITTHF
DYHSIDQNLL KLDILGHDDP TVIRMLQDIT GVDPKTIPMD DKKTMSLFSS TEALGVTPEQ
INSKVGTFGI PEFGTRFVRG MLLDTLPKAF EDLICISGLS HGTDVWLGNA KDLIDAGTVT
LSEAVCTRDE IMTYLIRKGL PPNTAFKIME IVRKGKALKE PKWPEYETLM REHDVPEWYI
DSCRKIKYMF PKAHAAAYVM MAFRIAWFKV HIPLAYYAAY FTIRAKAFDA EFMIFGKEKV
KAKMKEIEAL GNQAAPKDKD MYDDLEIVLE MYERGFSFLP IDIYASHATK FQVEGNALRP
PLNSISGMGT IAAEGLYNAA QEKPFNSLED VKKRGKIGNS TMELLSKFDC LKGIPESDQI
SFFDLIS
|
|---|
| |