Gene Dhaf_0493 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_0493 
Symbol 
ID7257460 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand
Start bp539758 
End bp542826 
Gene Length3069 bp 
Protein Length1022 aa 
Translation table11 
GC content43% 
IMG OID643560412 
Productsignal transduction histidine kinase, LytS 
Protein accessionYP_002456996 
Protein GI219666561 
COG category[T] Signal transduction mechanisms 
COG ID[COG3275] Putative regulator of cell autolysis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000359244 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCTGGATA GATTGAGAAG ATATTTTAAG ATAAAACAGC TTATCGCTGT GATAATCCTA 
TTAAGCACAA TGTTGCTGAT GCTATCCACT ATTTACTATA CCGATGCTCC CGAACAAGAA
TCTCCTGCTG CTGTACAGGG GACTCTGGAT CTGTCTTCCT GGGACTTCAC AAAGGATAGG
AGTGTCTTCC TAAATGGAGA ATGGGATTTT TACCCGGGAA AACTTCTGCA GCCTGAAGAG
CTTCCCAAGG AAACTCATTA TTTCATGAAA GTTCCCGGGG GCTGGGATAA AACAAAGGGG
GCTTTCCTTC AGAAATCAAG GGGAAACGGC ACCTACAGGC TCTCTGTAAA GCTGCCGGAA
TTGCAGGAGC AGCTGGGGTT AAAAATTCAT AATATATGGA TGGCCCACAG GCTTTTTATC
AACGGTCAAT TGGTCAAAGA ATCCGGACTG CCCTCAGACA GTCTTGAGGG CTATCAGGCC
CTTAATACGC CATACGTTGT TGTAGTAGAG CCGGCTGAGG AGCTGGAGAT CGTTATTCAG
GTATCGAATC AAGTCCATTT TACGGGAGGA ATTGCCCACC CCATTCAGCT GGGGCTCAAG
AATTACATAG AGAAGAAAAA TATGCTGGCC TTTGGAGGAG ATATGGCAGT TTTTCTGCTG
TTTCTTATGT TTGGAATTTA TCACCTTCAT ATGTACAACA TGAGGGACAA AGAAAAAACC
TACCTGTTCA GCGGACTGTT TTTGCTAAGC ATCTCTATAG TCTCAATTAC TTTTGGGGAA
AAAGTTTTAA TGCAGGTTTT TGAGGAGATC CCCTTTGCCG TGGCTTATAA ATTACAGGAT
TTTTTTCTTT TTGCCAGCTT TGCAGCGCTG ACTTTATTTA TTCAGTCCCT GGAGCCGGGA
ACTATCAAGG GGAGGAATTT AATTCTATCC CTGATGCCCG TGCTGATTTA TCTGGGAGTG
GTTATCTTGA TACCCTACCA CTGGTATTCG CCCGTCAAAT TATATATTAC TTTTTACGCT
AATTTACTGC TGTTTTTTTA TATTATAAGA CTTATCTATA TGCTTTTTTA TAAAAAACAG
GGAAAATTGC CCCTTAATGA GTCGGTTTAT ATTTTCCTGT GCTGTATATT TGCCGGAGTC
ATCATTATTG ATTACAACTT ATATTATTCA GGATATACCA ATGGAAATAT GATTGCGAGA
TTAGGGATAT TCGCCTTTTT GCTCAGCCTC AATCTCTTTT TGTCCAGGCG GTTCACCAAC
AAAATGAATG AAGTACAAGC CCTTTCCGAG GAATTGATAA GGTCCAGGGA AATAAAGGAT
GAGTTTCTGG CCAGAACATC CCATGAGCTG AAAACTCCCC TCCACGGTAT TATCAATATC
TCCGGCCACC TTTTGAAGGG AGAGACATCT TCCTTAAGCC TGGAGCAAAG GGAAAACCTT
TTGTTGCTCC AGGATACTTC CTCCAGGCTT TCGCTGCTGG TTAATGATTT AGTTGACATA
ATAAAGCTTC GCCATGAGGA CTTGCAGCTG AATCTTATCA CGGTTGATTT ATATGTGGTG
ATTCAACTGG TATTTCAACT GTTGTCCTTT GATTTGCAGG GCAAGGAAGT GAAGATGCTG
AATAAAGTAA AACCTATGAC CTTCGTAGAG GCTGATGAAA ATCGCCTGAG GCAAATTTTA
TATAATATTA CCTCCAACGC CATGAAGCAT ACGGAAAAAG GAGAAATTGT TGCCCAGGCA
AGGGAGGAGG GCTTGGACAT AGTCCTGACC ATTTCCGATA CGGGAAAGGG AATTCCGCAG
GAACATTGGG AGCTGGTCTT TAAGGACTTC AATCATGATT CGCTGCCGCA GCAGGACTAT
AAACAGGGTA TGGGTTTGGG GTTATATATC AGCAGGCAGC TGGCCAGAAA AATGAAGGGG
GAGGTATGGA TTGCCGATTC TGTTGTCAAT AAAGGGACAA GTATGGCGGT ACGACTTGCC
AAGGGGCAGT GTTTAAACAC CGAAATGACT GCCGGATCGG TATTGGAAAG AAAAGTTTGG
AGTTCAAAAC CAACAAGTTC CGGCTTAAGT GAGAAAATGA AAAAGATATT GATTGTCGAT
GATGAACCCA CCAATATTAG AGTTTTATCC CTTATGTTGG AGGGAGAGTA TCAGGTGTCT
GCAGCCTATA GTGGGGAGAA AGCCCTGGAA TCACTTAAAA ACGAAAAATT CCATCTTCTT
TTGACCGATC TGATGATGCC CGGCATGTCA GGTATCGAAC TGACCCAACA AATAAGACAA
AATTACTCTC TGATCGAACT GCCTATTATC ATTGCCACAG CCAGGAACAG AGAGAGGGAA
ATAGAATTGG CTTATCAAAA CGGCGCTAAT GATTATATTA CCAAACCCTT TACGGCAGAA
GAGGTTCAAT GGAGGGTAAG GAGCCTGCTG AAGCTGACGG ATACCATGGA GAAGGCTTTT
GAAAGTGAGA TGGCTTATTT GCAGGCCCAA ATCAAGCCCC ATTTCATCTA TAATGCTTTA
AGCAATATCA TTGCCCTCTG TCATGAGGAT GGGGAGAAGG CTTCAGAGAT GTTATCCCTC
CTGAGCAGAT ATTTAAGACA TATTTTTCAG CGGGATCAGA ACCAGCAGAC TTTACAACTG
CAGCAGGAGC TGGACCTTAT CAAAACCTAT GTGGAAATTG AACAGCTGCG GTTTGGAAAG
CATCTTCACT ATGAAACCTA TGTTGATCCG GAAATCCTCA ATAAGGGGAT AAAGATTCCG
ACGCTGCTTA TTCAGCCTTT GGTTGAAAAC GCCATACGGC ACGGGCTTTT TAATAAAGAA
GGAGAGGGAA CGGTGTCTCT GAGGATTACG GAGGGGGAAG GATTTATTCA CATTATCGTA
GAAGACAACG GCGTAGGTAT GAGTGAGGAT GAGGTAGGGA GGATCCTGAA CGGAAAAGGG
GGAAAGGGTG TAGGCCTCAA GAATGTTTTG ATGAGGGTAG CCTCCTTGCC CAAAGCTGCT
TTTTTAATCG ACTCTGAATT GGAAAAGGGA ACCCGGTGCA GTATTTTTTT GCCCAAAGAG
CTGGTTTAA
 
Protein sequence
MLDRLRRYFK IKQLIAVIIL LSTMLLMLST IYYTDAPEQE SPAAVQGTLD LSSWDFTKDR 
SVFLNGEWDF YPGKLLQPEE LPKETHYFMK VPGGWDKTKG AFLQKSRGNG TYRLSVKLPE
LQEQLGLKIH NIWMAHRLFI NGQLVKESGL PSDSLEGYQA LNTPYVVVVE PAEELEIVIQ
VSNQVHFTGG IAHPIQLGLK NYIEKKNMLA FGGDMAVFLL FLMFGIYHLH MYNMRDKEKT
YLFSGLFLLS ISIVSITFGE KVLMQVFEEI PFAVAYKLQD FFLFASFAAL TLFIQSLEPG
TIKGRNLILS LMPVLIYLGV VILIPYHWYS PVKLYITFYA NLLLFFYIIR LIYMLFYKKQ
GKLPLNESVY IFLCCIFAGV IIIDYNLYYS GYTNGNMIAR LGIFAFLLSL NLFLSRRFTN
KMNEVQALSE ELIRSREIKD EFLARTSHEL KTPLHGIINI SGHLLKGETS SLSLEQRENL
LLLQDTSSRL SLLVNDLVDI IKLRHEDLQL NLITVDLYVV IQLVFQLLSF DLQGKEVKML
NKVKPMTFVE ADENRLRQIL YNITSNAMKH TEKGEIVAQA REEGLDIVLT ISDTGKGIPQ
EHWELVFKDF NHDSLPQQDY KQGMGLGLYI SRQLARKMKG EVWIADSVVN KGTSMAVRLA
KGQCLNTEMT AGSVLERKVW SSKPTSSGLS EKMKKILIVD DEPTNIRVLS LMLEGEYQVS
AAYSGEKALE SLKNEKFHLL LTDLMMPGMS GIELTQQIRQ NYSLIELPII IATARNRERE
IELAYQNGAN DYITKPFTAE EVQWRVRSLL KLTDTMEKAF ESEMAYLQAQ IKPHFIYNAL
SNIIALCHED GEKASEMLSL LSRYLRHIFQ RDQNQQTLQL QQELDLIKTY VEIEQLRFGK
HLHYETYVDP EILNKGIKIP TLLIQPLVEN AIRHGLFNKE GEGTVSLRIT EGEGFIHIIV
EDNGVGMSED EVGRILNGKG GKGVGLKNVL MRVASLPKAA FLIDSELEKG TRCSIFLPKE
LV