| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_0306 |
|---|
| Symbol | |
|---|
| ID | 7257271 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | + |
|---|
| Start bp | 341841 |
|---|
| End bp | 343814 |
|---|
| Gene Length | 1974 bp |
|---|
| Protein Length | 657 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 643560223 |
|---|
| Product | sigma54 specific transcriptional regulator, Fis family |
|---|
| Protein accession | YP_002456809 |
|---|
| Protein GI | 219666374 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.715643 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAAGA ATTATGATGA AACAGAAGTC ATGACAAACA GGGTTACCTT TTTAGCAGAA
GGGAAATGCC CCTCCACAGG GGTAAGGGAG GAAGTGCTCG CTTCATGGGA GAAATGCAGA
GAGCGCCGGC TTGATGCCAA GACAACGGTG ATCAAAACCC TGCCGACTAT TTCCGAAGGT
GAAAAGCTTC CCAATCCGAT TATGTCTTTT TTGAGAGACG ATATTCTGCC TGATATCACT
AAATTGCTTT ATCAGTTGCT CCAGGAGTGT CAGGGGGCCT TGTTTTGGGT GTACCAAAGA
AACGCTATTG TTTTTTCCCA AAGGGGAAAC CAGGATTTCC TCAGGCAGTT GAACCAGCAT
AATATTGGCA TTGGCACCTG TCTCTCAGAA GAGTATATAG GAACCACTGC TTTTTCATTG
GTGGATAAAC CCCATGAAGA ATCCTGGGTC ATTGGGCATG AACATTATTT GGATTTGCTT
ACTCCCTATG CCACTTATAC CTATTATCAG GAAGATTTTT ACGGTCACTC CTATGCCTTT
ATCATCGTAC CCAAGGAAGC ATTTACCGAT GGGCTGCTTT CATATTTCCG GCTCTTTAAC
AAGGCCCGGG AAAGCACCAT CAGGTGCTAT AGGAACAGCC TGGAATCGGA TTTGAAAAGT
GAATTGTTTA ATCAGTTATC TGAGGCAAGA AATGAAGCGG TTATTTTCAT TGACTCCTTT
GGCAAGATTG TGGATGCCAA TCAGAAGTTC TCCAAATGGG TCAATGTGGA GAAAGCTGAA
TTGAAGGATA AAGAATTGAC CGAGGTATTG CCCGAGATGC AAAGAATCCT CTCCTGTCTG
GAAACGGGTA AAACTATCAC TTCGGAGGAA ATTCAATTAT CCAAGCTGCC CCCCCATATG
CAGTTTGTGC AAATGGATGT AAAGCCTATC GAAAGCGATA AAAAAATTAC CGGCTTGATC
ATTATCTTAA TGGACAATAA AACCTTTCGC CAAAGAATGA GTAAAATCTC CAACCAGGCT
TACTATACCT TTGATCAGAT CATCGGAGAG TCTGGGGCGT TGCAAGAAGC AAAACAAAGG
GCTATGAATG CGGCCTGCAG CAGCAGTAAT GTCATTCTTT CCGGAGAAAG CGGAACCGGT
AAAGAGTTAT TTGCCCAGGC CATCCACAAG GCCAGCCCCA GACGGGAGGG TCCCTTCGTT
TCTATTAATT GTGCGGCTAT CCCTACAGAG TTAATTGCCA GTGAGCTGTT TGGCTATGTG
GAAGGTGCTT TTACAGGAGC CAGAAAAGGC GGTTCCATGG GTAAGTTTGA GTATGCCAAT
ACAGGGACCA TATTTTTGGA TGAGATTGGG GAAATGCCCC TCCATATCCA GACAATTTTA
CTGAGGGTAC TGGAAGAACG GAGGGTCAAC CGGATCGGCA GCAATATTGC AACACCTGTG
GATGTCAGGC TAATCTGCGC CACCAACAGA AATCTCCATA AGATGGTGAA GGATGGTTCC
TTCCGCTTGG ATTTATATTA TAGAATCAAT GTACTCCATA TTCATCTGCC GCCTCTGCGA
GAACGCATTA CGGACATTCC GATTATTGTT GATTATTATC TGGATTACTT TAATAGATTC
TTAGATAAAA AGGTCAGAGA AGTGGCTCCT GAGACCATGG CTTTTTTAAT TAATCATTCC
TGGGAAGGGA ATTTACGGGA ATTAAGAAAT ACTATTGAGT GCGGCATCAA CAACGCTATG
GGCAAAACTC TGGAGCTTGA GCATTTACCC AGGTACTTTT TTGAGAAAGA AGAAAAGATG
TTTGATGATC GGGAAGGCTC CTTGGGCCAT GAAAGCGTCT ATGAGTTTGA GGAAAAGAAG
AAGATGCTGG CTTTGATGAT AAAATTCAAT GGCAACAAAT CAGCAGTGGC AGAAGAGATA
GGAATATCCA GAAGTACCTT ATATAGAAAA CTGAAGAGCT ATAACCTGCT CTAA
|
|---|
| Protein sequence | MLKNYDETEV MTNRVTFLAE GKCPSTGVRE EVLASWEKCR ERRLDAKTTV IKTLPTISEG
EKLPNPIMSF LRDDILPDIT KLLYQLLQEC QGALFWVYQR NAIVFSQRGN QDFLRQLNQH
NIGIGTCLSE EYIGTTAFSL VDKPHEESWV IGHEHYLDLL TPYATYTYYQ EDFYGHSYAF
IIVPKEAFTD GLLSYFRLFN KARESTIRCY RNSLESDLKS ELFNQLSEAR NEAVIFIDSF
GKIVDANQKF SKWVNVEKAE LKDKELTEVL PEMQRILSCL ETGKTITSEE IQLSKLPPHM
QFVQMDVKPI ESDKKITGLI IILMDNKTFR QRMSKISNQA YYTFDQIIGE SGALQEAKQR
AMNAACSSSN VILSGESGTG KELFAQAIHK ASPRREGPFV SINCAAIPTE LIASELFGYV
EGAFTGARKG GSMGKFEYAN TGTIFLDEIG EMPLHIQTIL LRVLEERRVN RIGSNIATPV
DVRLICATNR NLHKMVKDGS FRLDLYYRIN VLHIHLPPLR ERITDIPIIV DYYLDYFNRF
LDKKVREVAP ETMAFLINHS WEGNLRELRN TIECGINNAM GKTLELEHLP RYFFEKEEKM
FDDREGSLGH ESVYEFEEKK KMLALMIKFN GNKSAVAEEI GISRSTLYRK LKSYNLL
|
|---|
| |