| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5571 |
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| Symbol | |
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| ID | 8229186 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 6695261 |
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| End bp | 6698917 |
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| Gene Length | 3657 bp |
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| Protein Length | 1218 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644933417 |
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| Product | signal transduction histidine kinase with CheB and CheR activity |
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| Protein accession | YP_003089926 |
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| Protein GI | 255039305 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG1352] Methylase of chemotaxis methyl-accepting proteins |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.273526 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAACC CTAAAAAGGA GACGCCCGAA AAGGCTTCCC TTCATCAGAT GTTGGTCGTG
GGCATTGGTG CCTCGGCGGG AGGTATTGAA GCACTCACAG AATTTTTTGA ACACGTACCC
GCCCGCACCG GCCTCGCTTA CCTGGTGATG CTGCACCTGG CGCCGGACGA GGACGAGCAA
CTGACCGAAA TACTGTCCAA GGTGGCGAAA TTACCGGTGC TGAACGTGGC AGACAGTGCC
GAAATCGTTC CTGACAGGAT TCTGATCCTT CCGGCCATCA AGCACGTGCA GATAACCAGC
GGCCGGATTT CGATCGTCAG GGATATGCAG ATTGAAGAAC GGCGCGCGCC GGTAGATGTC
TTTTTCCGGA CGCTCGGGGA GGCTTACCGG GACCAGAGCG TGGCCGTCAT ATTGTCGGGA
ACGGGCGCCA ACGGCTCCAT GGGCCTCAAA AGGATCAAGG AATATGGCGG GGCGTCGTTC
GTGCAGAATC CCAGGGAAGC CACTTTCAAT GAAATGCCGC GCAGCGCGAT CGCCACGGAA
CTGGTTGACA ACATCCTGCC CGTTGCCCAT ATTCCTGCCC AACTCCTGTC GTACCGCCAA
GGCCTGGGTA CGGTGGCGAT CACCGTGGAA TCAGAAACAC GCCCGCCGGA CGAGCAGCAG
GCGCTCCGGG AGGTGTTTAC CCAGCTGCGC ATGCGCACCG GCCACGATTT TTCGAATTAT
AAAAGGCCGA CGCTCATGCG CCGCATCGAG CGGCGCATTA ATGTGCTCAA CCTGCCCAAC
CTGCCCGCAT ACGTCGCTTA CATGCGCGAG CATCCGGACG AAACGCAGGC ATTGCTCAAA
AATCTGCTGA TTTCGGTCAC GAACTTCTTC CGCGATAGCC GCGCATTTCT CGCGCTCGAG
CAGGAAACAC TGCCGCTGAT CATGGAAGGG AAAGATCAGG AAAATACGGT GCGGGTGTGG
GTGGCAGGCT GCGCTACGGG TGAGGAGGCC TATTCGCTCG CCATGCTGTT TGCCGAGCGG
ACCATGAGCA CGATCGACGC CCCGAAAGTA CAGATCTTCG CGACGGATAT CGACGAAGCG
GCACTGGCCA TTGCCAGGGA TGGAAAGTAC AGCATCAACG ACGCCGCCGA CGTATCGCCG
GAGCGGCTGA GAAGGTTCTT CACACGCGAT GGAGACGAAT ACCGTATCCG GCGTGAGATA
CGCGAAATGG TGCTTTTTGC GAGACATAAT GTGCTGAAAG ACCCGCCATT TTCGCAACTC
GACCTGGTGA CCTGCCGGAA CATGCTGATT TATCTCAATC AGACGGCTCA GGAAAGGGCG
ATGGAAACAT TCCATTTCGC GCTCAAACCG GGCGGATTCC TGTGGCTCGG CATGTCCGAA
ACGGTGGACG GATCGAGCGA TTTGTATTTC AATGTGAGCC GGGAATACCA TTTGTACCAA
AGCCGCCAGG TAACCACGCG GTCGTACCCC GTGCCGGAAA CCATTCCTCA GTTTATCCCC
GAAAAGAAAA GTACCGTCCC CACTGTGAGT GAAATAGAGG TGCGCCCGGC GGCACGACTG
AGTTTCGGCG ATTTGCACCA GCAGCTTCTG GAACAATATG CGCCGCCTTC CATTATTGTA
AATGAAGAAT ACGACATCCT GCACCTGTCC GAACGCGCGG GTAACTACCT GCACATTACA
GGCGGCGAAC CGACGAAAAA CCTGCTGAAA CTGATCCGGC CGGAGCTGCG TCTGGAGTTG
CGGACGGCAT TTTACCAGGC CGTGCAGCAG CAGGCCCACG TAGAGGCAAG AAACCTGAAA
ATCCGGGTAG GAGAACATTC CGAAACCGTA ACAATGCACG TGCGGCCGGT AATGCGGGAG
GGTGATCCCG CCCGAGGGTT TATCCTGATT TTGTTTCAAC AAACCGGGCA GGACAACGAA
GCTGAAAGTT TGCAGACGTC GGTGGAGCCG ATGGCGCGCC ACCTGGAAGA AGAACTGATC
CGCGTCAAAG CGCAGCTGCG AACCTCGAAC GAGCAGCACG AGGTGCAGGC CGAAGAGTTA
AAAGCGTCCA ATGAAGAGTT GCAGGCCATT AATGAAGAGC TGCGGTCGGC AGCGGAGGAG
CTGGAAACAA GCAAGGAGGA GTTGCAGTCG ATCAACGAGG AGCTGACGAC CATTAACCAG
GAATTGAAAG TGAAGGTGGA GGAAATATCG CTGACCAGCA ATAACCTCCA AAACCTCATT
AATTCCACCA ACATGGCCAC CCTGTTTCTC GACCGCAGTT TCCGGGTAAA CCTGTTCACG
CCTGCCACAC GGGAGATTTT CAACCTGATC CCGGCCGATT TCGGACGTCC GCTGTCGGAC
ATTACCAACC GCCTCGATTA CCTGCATTTG CAGGAGGACG CGGAGCTGGT GCTGGAAAAG
CTGCAAACCG TGGAACGGGA GGTTAGAAGT AAGGACGGGC GCGTGTATAT GATGCGCGTA
ATGCCCTACC GCACCGCCGA GGACCGCATT AACGGGGTAG TTTTCACTTT TGTGGACATT
ACGGGCCCCA AGGCGGCCGA GGAGGCGCTG CGGGAAGCAG ACCGCCGGAA AGACGAATTC
CTGGCTATGC TTGCCCACGA GCTGCGGAAC CCGCTCGCGC CTGTGCGCAA TACGTTGCAG
ATCATGAAGA TGACCTCTGG CGACGACGAG CGTGTGAATG CATCGGTGGC CATGATGAAC
CGCCAGGTGG ATCACCTGGT GAGGCTGGTG GACGACCTGC TGGATGTGAG CCGCATCAGC
CGCGGGAAAA TCGAGCTGCG GCGCGAGCAG GTAGACCTCA GTGCGCTGGT AGCCGAAGCG
GCCGAAGCGA CACGCTCCTT GTACGACTCG GGAAACAGGA AGCTGATACT GGAATTGCCG
GGTACTCCAC TGTATTTCAA CGGCGACGCC ACACGACTGA ATCAGGCAGT GACCAACCTG
CTGACGAACG GCGTCCGGTT CACCAAAGAA AACGGCAATG TATGGGTTGC ATTGGAGCAA
AAGGGCAGTG AGGTTATTCT AAGTGTGAAA GACGACGGCA TTGGGCTCAC TTCGGACCAG
TTCGAAGCTA TTTTCGAGCT TTTTGCACAA GTTGACCTCT CGCCCGGAAA AGCGGAAGGC
GGTTTGGGCC TCGGCCTGAC GCTGGTGAAG CAGCTCGTCG AAATGCACGG CGGCAGGGTG
GAGGCCAGCA GTAACGGACT CGGCGAGGGA AGCGAATTCC TGGTTTACTT CCCATACCTC
GACGTGCCTG TGGAATTTAC GCCCCCCATC ACTGAAAAAC ACGCGAAAGC CGCCGCAAGG
GAAATATTGG TGGTAGACGA CAATACCGAC GCCGCCGACA CGCTGGCCAT GTTGCTGAAA
TACCAGGGGC ATCATACGAG CGTAAGTTAC AGTGGGGCCC AGGCGCTTGA GATGCTGGAC
CAGCAGCCGG TGGAAGTGGT GCTGCTGGAT ATTTCGATGC CGCAGATGGA CGGGTTCGAA
ACGGCAAAGC AGATCCGCAA ACGCCCGAAC GGGCGGAAGG TCATGGTGAT CGCACTCACT
GGTTACGGCC AGTCGGAAGA TAAAAAACGC ACGAGACAAT CGGGATTTGA CGGGCATTTG
GTGAAGCCGG TGGACCTGAT GGAATTGAAT GAGCTTTTGG CAAAACTCTT TCCCTGA
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| Protein sequence | MKNPKKETPE KASLHQMLVV GIGASAGGIE ALTEFFEHVP ARTGLAYLVM LHLAPDEDEQ
LTEILSKVAK LPVLNVADSA EIVPDRILIL PAIKHVQITS GRISIVRDMQ IEERRAPVDV
FFRTLGEAYR DQSVAVILSG TGANGSMGLK RIKEYGGASF VQNPREATFN EMPRSAIATE
LVDNILPVAH IPAQLLSYRQ GLGTVAITVE SETRPPDEQQ ALREVFTQLR MRTGHDFSNY
KRPTLMRRIE RRINVLNLPN LPAYVAYMRE HPDETQALLK NLLISVTNFF RDSRAFLALE
QETLPLIMEG KDQENTVRVW VAGCATGEEA YSLAMLFAER TMSTIDAPKV QIFATDIDEA
ALAIARDGKY SINDAADVSP ERLRRFFTRD GDEYRIRREI REMVLFARHN VLKDPPFSQL
DLVTCRNMLI YLNQTAQERA METFHFALKP GGFLWLGMSE TVDGSSDLYF NVSREYHLYQ
SRQVTTRSYP VPETIPQFIP EKKSTVPTVS EIEVRPAARL SFGDLHQQLL EQYAPPSIIV
NEEYDILHLS ERAGNYLHIT GGEPTKNLLK LIRPELRLEL RTAFYQAVQQ QAHVEARNLK
IRVGEHSETV TMHVRPVMRE GDPARGFILI LFQQTGQDNE AESLQTSVEP MARHLEEELI
RVKAQLRTSN EQHEVQAEEL KASNEELQAI NEELRSAAEE LETSKEELQS INEELTTINQ
ELKVKVEEIS LTSNNLQNLI NSTNMATLFL DRSFRVNLFT PATREIFNLI PADFGRPLSD
ITNRLDYLHL QEDAELVLEK LQTVEREVRS KDGRVYMMRV MPYRTAEDRI NGVVFTFVDI
TGPKAAEEAL READRRKDEF LAMLAHELRN PLAPVRNTLQ IMKMTSGDDE RVNASVAMMN
RQVDHLVRLV DDLLDVSRIS RGKIELRREQ VDLSALVAEA AEATRSLYDS GNRKLILELP
GTPLYFNGDA TRLNQAVTNL LTNGVRFTKE NGNVWVALEQ KGSEVILSVK DDGIGLTSDQ
FEAIFELFAQ VDLSPGKAEG GLGLGLTLVK QLVEMHGGRV EASSNGLGEG SEFLVYFPYL
DVPVEFTPPI TEKHAKAAAR EILVVDDNTD AADTLAMLLK YQGHHTSVSY SGAQALEMLD
QQPVEVVLLD ISMPQMDGFE TAKQIRKRPN GRKVMVIALT GYGQSEDKKR TRQSGFDGHL
VKPVDLMELN ELLAKLFP
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