| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_5393 |
|---|
| Symbol | |
|---|
| ID | 8229004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 6512900 |
|---|
| End bp | 6516124 |
|---|
| Gene Length | 3225 bp |
|---|
| Protein Length | 1074 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644933238 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_003089751 |
|---|
| Protein GI | 255039130 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTATA CGGAACTACA AGTCACCACG AATTTCACCT TCCTGCGTGG CGGATCACAT
CCCGAAGAAT TGGTCGGCCA GGCAATTGAG CTGGGTTACA AAGCCATTGC CATTACCGAT
CGCAACACGC TCGCGGGTGT GGTACGTGCG CATGCGGCCG CGAAGGGCAA GGATTTCCGC
ATTATCCCCG CCTGCCGGCT CGACCTGCTC GACGGCCCCA GCCTGCTGGC CTATCCTACG
CACCAGGCAG CTTACAGCCA CCTTTCCGCA TTGCTCACCG AAGGCAACCT TCGCACGGAA
AAAGGCAAAT GCGACCTTTA CAAGGCCGAT GTGTACCGGT ACGCGGAAGG GATCAGGTTC
ATTGCGGTGC CGCCGGCCGC ACTCAACGAG TCCTTCGACT TCGACCCTTC CTTTGAGCAA
AATCTGCGGG AATATCGACG GGCGCTCGGA AAAAGCCTTT ATCTCGGTGC GATACGCTCT
TACCAGGGCG ATGACATGAA AAAACTTTAC CGCCTCGACC AGCTTTCCCA GCACCTCGAC
ATCCCCCTCG TAGCGACCAA CGACGTGCAT TACCACAACT TCCAAAGGCG CGAATTACAA
GACGTGCTTA CGTGTATCCG CGAGAAATGC ACCATTTACA ACGCTGGCTT CCGCCTGCAC
GAAAACGCCG AGCGGTACTT GAAACCGGCC GCCGAAATGC AGCGCCTCTT CATGAAATTC
CCCGAAGCCA TCGAGCGAAC CCAGGAAATC GCCGACGCCT GCCAGTTTTC GTTGAGCAGT
TTGAAATATG TATACCCAGA AGAGCTGACG ACGGAAGGGC GGACGCCCAT GGAAGAACTG
ATACATTTGA CCTGGCTGGG AGCGAAAAAG CGGTTTCCGA AAGGTATCCG CCCTGATATT
CATGCTAAAA TCTTACACGA ATTTAAGTTT GTTGAGGAAA TGAATTATGC CGCCTATTTT
CTAACGGTGT ATGATATTGT CCGGTTTGCA AACGAACAAA AAATTCTTTG TCAGGGACGC
GGTTCGGCCG CTAACTCGGT TATTTGCTAT TGTCTGGGCA TTACCTCCGT AGATCCTATT
GAAATTGACC TGCTTTTCGA ACGGTTCATT TCTTCTTCCC GAAATGAGCC ACCGGACATT
GATGTCGATT TCGAGCATGA GCGGCGCGAG GAGGTCATGC AGTACATTTA TAACAAATAT
GGCAGAGACC GGGCCGGTAT CGTCGCCACT GTTACGCAGG TGCATCAAAA AGGTGCGGTG
CGCGATGTGG CGAAAGCAAT GGGCATGTCC ATGGATGCGA TCAGTCGCCT GTCGAGTTCG
TTATGGGAGT TTACAGACGA GTGGTTTGAC GGCAAGCTTA TTACCGAGCA CGGCTTCAAT
CCCAATGACC CGCATTTGAT TAAAATCCTC GATTTAACAA GACAATACAT GGGTTTCCCA
CGGCAGCTGG GCCAGCATAC CGGTGGATTT GTGATCACGC AAGGCAAATT GTCCGACCTC
TGCCCTATTC TCAATGCCAG AATGGAAAAC CGCACCTGCA TTGAATGGAA TAAGGACGAT
ATCGACACAT TGGGTTTTCT GAAAATCGAC GTGCTGGCAC TTGGCATGCT CACATGCATT
CGCAAGGCAT TCGATTTACT AAAACAACAC TATGACATTG AGCATAATCT TGCCAGTATC
CCGCCGGATG ATCAGGATGT GTATGATATG ATTTGCAAAG CCGATACAAT CGGTGTTTTT
CAAATCGAAA GCCGGGCGCA GCAGTCGATG TTACCCAGAC TAAAACCACG GTGTTTTTAT
GACCTCGTCA TTGAAGTAGC CATTGTACGT CCCGGCCCGA TTCAGGGTGA CATGGTGCAT
CCTTATTTGC GCAGAAGGAA TGACGAAGAG GAGGTCGTGT ATCCCAAAAA AGAACTCGAA
GACATTCTGA AAAAGACGTT GGGTGTTCCA CTTTTCCAGG AGCATGCGAT GAAGATCGCC
ATTGTAGCAG CAGGTTTTAC CGCCACCGAG GCCGATGAAT TGCGCAGAAG CATGGCTACT
TTTAAATCCA AAGGCATTGT TAACACACTC AGGGACAAGC TCGTTAACGG AATGGTCAAA
AACGGCTACG AAAAAGATTT CGCCGAGCGG ATTTTCAAAC AACTCGAAGG CTTCGGAAGT
TACGGCTTTC CGGAAAGCCA CGCGGCGAGT TTTGCATTGC TGGTGTATGT GTCGTCGTGG
ATCAAATGCC ATCATCCCGA TGTGTTTGCG GCCGCGTTGC TCAACAGTCA GCCCATGGGT
TTTTACCGCC CGGCCCAGAT CGTGATCGAT GCGCGCAATC ACGATGTGAA AGTGCGGGAG
ATCGATATTA ACCACTCTTT TTGGGATAAT ACGCTTGAAA ACATCCCCGG CGAACAATGC
GCATTGCGGC TTGGTTTCCG GCAGATCAAA GGGCTTAGGG AGGAAGAAAT GCAGATTCTC
ACCAATGCCC GCACGCAACC GTTTACCCAT ATCCATCAAT TGCTCGAAGC CGGCATATCG
CATACCGCGT TGGAAAAACT GGCCGATGCG GACGCATTCA GGTCGATCGG CTTCGACCGC
CGGCAGGCAT TCTGGGAGGC ATCCGCATTG GCTGACCGAC CGATGGGGCT TTTTGCCGGG
CAACCGTCGC CCCGTGAAGC GGACGTGGAA TTGCCGCAAA TGACGCTCGC CGAGCATGTA
ATTCATGATT ACGCCACCAC GTCGCTATCG TTAAAGCAAC ACCCCGTCAG CTTCGTGCGC
GAACAGCTGG ATGCACTCGG CGCTGTACCG AGCAAAGCGC TTGAACTTAT TCCGGATAGC
CGGATAGTGA AAGTGGCAGG CCTGGTGCTC GTACGCCAAC GGCCGGGCAC GGCCAGCGGC
ATTTGCTTTA TCACCGTGGA AGATGAAACC GGCACGGCAA ACCTGGTCGT TTTTCAGAAT
CTTTTTGACA CTTATCGCAA AGAAATCCTG CGCTCCAAAT TGCTGATGGT CGAGGGAAAA
GTGCAAAAAG AAGGCTCTGT GATACACGTA GTGGTGAGCA AATGCATGAA TGCATCGGGA
TTGCTGCGGC AGCTGGGGCC CCACGAAGAA CAGGAGCCGG ATGTGCTCAC CTTATCGCGC
GCCGACGAAA AGGACGAATA CGACTCCCTG GCAAAAGGCC GGAAGTTGCA GGCACGGAAA
AACGTTCAGG CAGAGATTTT CCCCGCATCG CGCGACTTCC GGTGA
|
|---|
| Protein sequence | MNYTELQVTT NFTFLRGGSH PEELVGQAIE LGYKAIAITD RNTLAGVVRA HAAAKGKDFR
IIPACRLDLL DGPSLLAYPT HQAAYSHLSA LLTEGNLRTE KGKCDLYKAD VYRYAEGIRF
IAVPPAALNE SFDFDPSFEQ NLREYRRALG KSLYLGAIRS YQGDDMKKLY RLDQLSQHLD
IPLVATNDVH YHNFQRRELQ DVLTCIREKC TIYNAGFRLH ENAERYLKPA AEMQRLFMKF
PEAIERTQEI ADACQFSLSS LKYVYPEELT TEGRTPMEEL IHLTWLGAKK RFPKGIRPDI
HAKILHEFKF VEEMNYAAYF LTVYDIVRFA NEQKILCQGR GSAANSVICY CLGITSVDPI
EIDLLFERFI SSSRNEPPDI DVDFEHERRE EVMQYIYNKY GRDRAGIVAT VTQVHQKGAV
RDVAKAMGMS MDAISRLSSS LWEFTDEWFD GKLITEHGFN PNDPHLIKIL DLTRQYMGFP
RQLGQHTGGF VITQGKLSDL CPILNARMEN RTCIEWNKDD IDTLGFLKID VLALGMLTCI
RKAFDLLKQH YDIEHNLASI PPDDQDVYDM ICKADTIGVF QIESRAQQSM LPRLKPRCFY
DLVIEVAIVR PGPIQGDMVH PYLRRRNDEE EVVYPKKELE DILKKTLGVP LFQEHAMKIA
IVAAGFTATE ADELRRSMAT FKSKGIVNTL RDKLVNGMVK NGYEKDFAER IFKQLEGFGS
YGFPESHAAS FALLVYVSSW IKCHHPDVFA AALLNSQPMG FYRPAQIVID ARNHDVKVRE
IDINHSFWDN TLENIPGEQC ALRLGFRQIK GLREEEMQIL TNARTQPFTH IHQLLEAGIS
HTALEKLADA DAFRSIGFDR RQAFWEASAL ADRPMGLFAG QPSPREADVE LPQMTLAEHV
IHDYATTSLS LKQHPVSFVR EQLDALGAVP SKALELIPDS RIVKVAGLVL VRQRPGTASG
ICFITVEDET GTANLVVFQN LFDTYRKEIL RSKLLMVEGK VQKEGSVIHV VVSKCMNASG
LLRQLGPHEE QEPDVLTLSR ADEKDEYDSL AKGRKLQARK NVQAEIFPAS RDFR
|
|---|
| |