Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_5122 |
Symbol | |
ID | 8228729 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 6185071 |
End bp | 6186666 |
Gene Length | 1596 bp |
Protein Length | 531 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644932970 |
Product | peptide chain release factor 3 |
Protein accession | YP_003089487 |
Protein GI | 255038866 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG4108] Peptide chain release factor RF-3 |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.535643 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.522042 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTAATT TACAAGAAAT TAAGAAGCGC CGCACGTTTG CGATCATCAG TCACCCCGAT GCCGGGAAAA CCACGCTGAC GGAAAAGCTG CTCCTTTTCG GGGGCGCGAT CCAGACGGCA GGGGCGGTGA AATCCAATAA GATCAAGAAA ACGGCGACTT CCGACTTTAT GGAGATCGAG AAGCAGCGCG GTATCTCGGT GGCGACGTCG GTAATGACTT TTGAATACAA AGACCTGCTG ATCAACATCC TCGATACGCC GGGCCACAAG GACTTTGCCG AAGATACTTA CCGCACGCTC ACGGCGGTGG ACAGCGTAAT CCTCGTGGTG GACTGCGTGA AGGGCGTCGA GGAGCAAACC GAGCGCCTCA TGGAAGTTTG CCGCATGCGC AATACGCCGG TGATCGTGTT CATCAACAAG CTCGACCGCG AAGGGCAAAA CCCGTTCGAA TTGCTCGACG AGCTGGAAAG CAAACTAAAT ATCCGGGTTC GTCCGCTTAC CTGGCCGATT AATATTGGGG CCAATTTCAA AGGCGTTTAC AGCTTGTACG AGCAAATGCT GTATTTCTTC AAAATCAACA AAACCAAAAT CGAGGCGGAC GTCGCGAAGG TGAACCTTGA AGACGAGAAA TTGGAAGAAT TGCTTGGTGA AAGAGATGCC AATCAGCTGA CAGAGGACGT GGAGCTCGTA GAAGGCGTTT ACGATGCATT CTCGGAGGAA GCGTATCAGA AAGGCCAGCT CGCGCCGGTT TTCTTCGGAA GTGCGATCAA TAACTTTGGT ATCAAGGAGT TGCTGGACAC ATTCTGCGAG ATTTCGCCCA TCCCGCAACC GCGCCCGACC GACGTACGCG AGGTGGAGCC AACGGAGCCT AAATTCACCG GTTTTGTATT TAAAATCCAC GCCAACCTCG ATCCCCGCCA CCGCGACCGC ATTGCGTTTC TACGCATTTG TTCGGGGAAA TTTGAAAGGG GTAAATTCTA TAAACATGTT CGTTTGGGCA AGGACGTGCG TTTTTCCAGC CCATTCACCT TCATGGCTTC GGACAAGAGC GTGATGGACG AAGGCTTCCC GGGCGATGTG GTCGGTTTGT ACGACACCGG TAACTTCAAA ATCGGCGATA CATTGACCGA AGGCGAAGCC CTGCAATTCT CGGGAATTCC GAGCTTCTCG CCCGAGATTT TCAAAGAGCT GATCAACATG GACCCGATGA AATCCAAGCA ATTGGAAAAA GGCATCCAGC AGCTCACCGA CGAAGGTGTG GCGCAGCTCT TCACCCTCGA TTTAGGCAAT AGAAAAATCG TAGGTACGGT TGGAGAACTC CAATTTGACG TAATCCAATA TCGACTTGAA CACGAATATG GCGCCAAATG CCGCTGGGTG CCGATGAATA TTTCCCGCGC CTGCTGGCTC ACCGCCGACG ACAAGCCGGC CATGGACCAG TTTGTCCGCC TCAAAGGCAA CCAGATCGCC TATGACAAGG ACCGCAACCC GGTTTTCCTT GCCGAATCCG AATGGATGAT TCGTATGAAC CGCGAAAACA ACCCCGCCAT TCACTTCCAT TTTACATCCG AGTTTAAGAC TGAAATGGCA TTGTAA
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Protein sequence | MSNLQEIKKR RTFAIISHPD AGKTTLTEKL LLFGGAIQTA GAVKSNKIKK TATSDFMEIE KQRGISVATS VMTFEYKDLL INILDTPGHK DFAEDTYRTL TAVDSVILVV DCVKGVEEQT ERLMEVCRMR NTPVIVFINK LDREGQNPFE LLDELESKLN IRVRPLTWPI NIGANFKGVY SLYEQMLYFF KINKTKIEAD VAKVNLEDEK LEELLGERDA NQLTEDVELV EGVYDAFSEE AYQKGQLAPV FFGSAINNFG IKELLDTFCE ISPIPQPRPT DVREVEPTEP KFTGFVFKIH ANLDPRHRDR IAFLRICSGK FERGKFYKHV RLGKDVRFSS PFTFMASDKS VMDEGFPGDV VGLYDTGNFK IGDTLTEGEA LQFSGIPSFS PEIFKELINM DPMKSKQLEK GIQQLTDEGV AQLFTLDLGN RKIVGTVGEL QFDVIQYRLE HEYGAKCRWV PMNISRACWL TADDKPAMDQ FVRLKGNQIA YDKDRNPVFL AESEWMIRMN RENNPAIHFH FTSEFKTEMA L
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