| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4979 |
|---|
| Symbol | |
|---|
| ID | 8228585 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 6022259 |
|---|
| End bp | 6025555 |
|---|
| Gene Length | 3297 bp |
|---|
| Protein Length | 1098 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644932827 |
|---|
| Product | secreted protein containing FG-GAP repeats |
|---|
| Protein accession | YP_003089344 |
|---|
| Protein GI | 255038723 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.55758 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAAAA TTTTACTCCT GGCAATACTT CTTTCAGGCT GCAAAAACGA CGAGACACTT
TTCACGCTGC TCGACGCTGG CAAAACCGGC GTCGACTTTA ATAATTACAT TGACGAGGAT
GAGGAAAACA ATGTGCTTCG TTACGGGTAT TTCTACAATG GGGGAGGTGT GGCGGCTGCG
GATTTCAATA ACGACGGGCT GATCGACCTG TACTTTACAG GCAATATGGT CGCCAACAAG
TTATACCTCA ACCGCGGCGA TATGGAGTTT GAAGACGTCT CGGAGCAGTC AGGAACGGGG
TTGAATGAGG GATGGAAAAC GGGCGTTTCG CTGGTGGACA TTAACGATGA CGGCTGGATC
GACATTTTTG TGAGCCGCGC CGGCGCGCAG GACCCGCGCT TGCGTACGAA GCTGCTGTAC
ATCAACAACG GAAAAACGGC GGACGGCATC CCGACCTTCA CCGAAAAAGC AGCCGAATAT
GGTCTCAATG ACGCATCTTA CACCACCCAG GCCGTATTTT TCGATTACGA TCGCGACGGT
GATACGGACT GCTTCCTGCT CAACCATTCG TTGCAGAAAT ATGCCGGATT CAGTAACCTT
CTCGCCGATT ACCGCCAGCA ACGCAACGAG GCCTATGGTA ACAAACTGCT GCGGAACGAC
GGCAATCGTT TCACGAACGT CACCGACTTT GCCGGCATCG TGTCCAATGT CCTCAGTTTT
GGATTGGGGG TGAATGTAAA TGATTTCAAC AACGACGGTT GGCAGGACCT CTACATTGCC
AATGACTATA ATGAAAACGA TTACCTCTAC CTGAACGAGC GAAACGGCAA ATTCAAAGAA
GTAATCCGCG AGGCGATGGG GCACGTGTCG CTGTATTCGA TGGGCACCGA CGCCGCCGAC
CTGAACAACG ATGGCCTGAT GGATGTGGTG ACGCTGGATA TGCTGCCGAA CTCTAACGAA
CGCATCAAAC TGACCTCAGG CGATGACAAC TACGACAAGT ACCAGCAACT CCTGCGGGCC
GGTTTCCATG ACCAGAGCAT GCGCAATATG TTGCAGCTCA ATAATGGCGT GAACGCGAAC
GGCATTCCGG TTTTTAGCGA AATAGGGCAG CTTGCCGGCA TTTCCAACAC CGATTGGAGC
TGGGCCGCAT TAATGGCCGA CTTCGATAAC GACGGCTGGA AAGACATTTT TATCTCGAAC
GGCTATGCGC GGGATTATAC CAATATGGAC TTCCTCAAAT ACTCTGCCGA CAAGCAGGTA
GAAGGCAACC ACAGCGGCAA TGCGCCAAAG CAAATGGAGA TCATCGCCCA GATGCCGCCT
ATCAACGAGC CCGATTACAT TTTCCAAAAC CAGAAGAACC TCACATTCGC GAAAAAGGTA
AAAGAATGGG GTTTTGAAAA AGAAAACCAG TCAAACGGCG CTGTGTATGC CGACCTCGAC
AACGACGGCG ACCTGGACCT CGTCACCAAC AATGTTGGGC AAAAGGCCTT CATTTACCGG
AACAATGCCG GGGAAATGCT GGGTAACAAT GCTTCGCTGC GGGTGAGGCT ATCGTCGCCG
AAATATGCTT ACCTGGCCGG CGCGAAAGTG ACCTTGTACA GCGATTCCCT CACACAAACG
CAGAACTTCA TCCCCGTTCG CGGCTTCCAG TCGGCGCAAT GGGATGCGCT GCACTTTGGT
TTAGGTGGAA AACCGCGGAT CGATTCGCTG GAAGTAACCT GGGCCGACGG CCGCAGGCAG
AGCCTGAAAA ACGTGAGTGG TAAGGAAGTC ACGCTCCATT ACACCGATGC CCGCCCCGCG
CCCGCCAGCC GGGCCGTGCA GGAGGCATTA TGGGAACCGG CACCGGCCAT CGATTTCACG
CACACCGAGG ATGAGCGCAA CGATTTTCGC ATCCAAACCC TGCTGCCCGG CATGCTTACC
TACCAGGGAC CGCGTTTAGC ACAAAAAGAC CTGAATGCCG ACGGCACCGA CGACTTTTAC
ATCGCAGGTG CCCGCGGCCA GGCGGGGGCA TTGTTCGTCA GTAGCAATGG CACCTTCCGG
AAATCCATGC AACCCGCATT CGAGGCCGAT GCCGGATTTG AAGACGCGGA CGCGGTATTT
TTCGATGCCG ATGGCGATGG GGACCAGGAT TTGCTCGTGA GCAGCGCCGG TTATGAGTTG
AATGCAGATG ACCCGCTGCT TGCGCCAAGG CTGTATTTAA ACAGCCAAAA CATTTTCAAA
AAGGCACCGT TCCCGGCTGG CGTGCTCAAT GCGGCGGCAG TGGCAGTGGC CGATGTGGAT
GGCGACGGCG ACCTCGATAT TTTTCTCGGC TCGCGTGTTT CGCCCGGCCG CTTTCCCGAA
AGTGCGGGAG GGGTATTGCT GATCAATAAC GGAAAAGCGG TGTTTTCGGA CGCAACCGCC
AGCCTCGCTC CTCAGCTTCG CAATGCGGGC ATGGTAACCG ATGCCGTGTT TGAAGATTTG
AATAAAGACG GCTTCCCCGA GCTGATCCTC ACGACCGACT GGGGGCCGGT GCAGATTTAT
GCCAATAACA AAGGAAAACT GGCGAATGCA AGCGAAAAAT GGGGCACCGC AAGTCTCCAC
GGCTGCTGGA ATGTGCTCCG GCCGGCTGAT CTCGACGGCG ATGGCGACAC CGATTTTGTA
GTAGGTAATA TGGGTGTAAA CTGGCAATGG AATATCACTT CGCCAACAGG TCTGTCGCTC
TACGCGGCCG ATTTCGATAA CCTCGATCGC ATCGTGCCCG TCGTGGCCGT GACGGAAGGA
GGCAAGGAAT ATCCATATGC AAGCCGCGAC GAACTCCTGG ACCAGGTGCC TTCATTGAAA
AAGAAATACA CGGATTATAT CGGCTATTCC AAAGCTACCC TGGCCGACAT GCTACCAGCC
GAAAAGTTGA AGACGGCAAA ACGCCTCGAA GCAAGGGAAT ACCGCTCGGG TGTCCTGGAA
AATGTGAATG GAAAACTGGT TTTTCACGCC CTGCCCATGG AGGCGCAATT CGCGCCGGTG
CATGCGATAC TGGTGCACGA CATGGATGGT GATTGGAAAA AGGACATCGT CTTGGGCGGC
AATGCCAGCC AGGCAAGGGT AAGAATGGGC AAAAGCGACG CCAGTCTTTT GCAGGTATTC
ACAAACAAAG GCGCATTGAA ATTCCATTAC CTGCCCCAAA AGCAAAGCGG CTTTTATGTA
AATGGTGACA TTCGCGACCT GGCCATTGTG AAGGCCAATG CCACGCACTA CCTCGTCGGG
GCGATCAACA ACGGGCCGGT GATAACATAC CGTTTCAGGC CCCGTACGGC ATTGTGA
|
|---|
| Protein sequence | MRKILLLAIL LSGCKNDETL FTLLDAGKTG VDFNNYIDED EENNVLRYGY FYNGGGVAAA
DFNNDGLIDL YFTGNMVANK LYLNRGDMEF EDVSEQSGTG LNEGWKTGVS LVDINDDGWI
DIFVSRAGAQ DPRLRTKLLY INNGKTADGI PTFTEKAAEY GLNDASYTTQ AVFFDYDRDG
DTDCFLLNHS LQKYAGFSNL LADYRQQRNE AYGNKLLRND GNRFTNVTDF AGIVSNVLSF
GLGVNVNDFN NDGWQDLYIA NDYNENDYLY LNERNGKFKE VIREAMGHVS LYSMGTDAAD
LNNDGLMDVV TLDMLPNSNE RIKLTSGDDN YDKYQQLLRA GFHDQSMRNM LQLNNGVNAN
GIPVFSEIGQ LAGISNTDWS WAALMADFDN DGWKDIFISN GYARDYTNMD FLKYSADKQV
EGNHSGNAPK QMEIIAQMPP INEPDYIFQN QKNLTFAKKV KEWGFEKENQ SNGAVYADLD
NDGDLDLVTN NVGQKAFIYR NNAGEMLGNN ASLRVRLSSP KYAYLAGAKV TLYSDSLTQT
QNFIPVRGFQ SAQWDALHFG LGGKPRIDSL EVTWADGRRQ SLKNVSGKEV TLHYTDARPA
PASRAVQEAL WEPAPAIDFT HTEDERNDFR IQTLLPGMLT YQGPRLAQKD LNADGTDDFY
IAGARGQAGA LFVSSNGTFR KSMQPAFEAD AGFEDADAVF FDADGDGDQD LLVSSAGYEL
NADDPLLAPR LYLNSQNIFK KAPFPAGVLN AAAVAVADVD GDGDLDIFLG SRVSPGRFPE
SAGGVLLINN GKAVFSDATA SLAPQLRNAG MVTDAVFEDL NKDGFPELIL TTDWGPVQIY
ANNKGKLANA SEKWGTASLH GCWNVLRPAD LDGDGDTDFV VGNMGVNWQW NITSPTGLSL
YAADFDNLDR IVPVVAVTEG GKEYPYASRD ELLDQVPSLK KKYTDYIGYS KATLADMLPA
EKLKTAKRLE AREYRSGVLE NVNGKLVFHA LPMEAQFAPV HAILVHDMDG DWKKDIVLGG
NASQARVRMG KSDASLLQVF TNKGALKFHY LPQKQSGFYV NGDIRDLAIV KANATHYLVG
AINNGPVITY RFRPRTAL
|
|---|
| |