| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4954 |
|---|
| Symbol | |
|---|
| ID | 8228560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 5991487 |
|---|
| End bp | 5992035 |
|---|
| Gene Length | 549 bp |
|---|
| Protein Length | 182 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644932802 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003089319 |
|---|
| Protein GI | 255038698 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.35389 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCGCAGA AAAAGCCAAA TATCATCCAA ACCGTCGCGT CCTATGGCAA GCAATTGCTG
GGATTTATCC GGCAGCGTGT GAATACCGAT GAGGATGCGG AGGATATTTT GCAGGATGTA
TGGTTCCAGC TCAGCACCGT GCCGGAGATC GAGGCGATCG AGCAGATGAG CAGCTGGCTC
TACCGCGTGG CCCGGAACCG CATTATCGAT AAATACCGGA AACAGAAACC GGAGTCGCTC
GAAGATTTTG GTTATGAAGA CGAAGACGGC GAGTTTCATT TCAAAGACAT CCTGCTCGCC
GACGACCATA CACCCGAAAC AGCCTATCTC AAAGACCTTT TCTGGGAGCA ACTGAGCATT
GCCCTCGACG AGCTGCCCGA AAATCAGCGG CAGGTTTTTA TCTGGAATGA ACTCGAAGAC
CAGACATTCC AGCAGATTGC CGACCGGACC GGAGAGAATA TTAAAACCTT GATTTCCCGC
AAACGCTACG CCGTCCGCCA CCTGCGCGAA CGGCTCGAAA GCGTGTACCG GGAGTTTGTA
AAATATTAA
|
|---|
| Protein sequence | MSQKKPNIIQ TVASYGKQLL GFIRQRVNTD EDAEDILQDV WFQLSTVPEI EAIEQMSSWL
YRVARNRIID KYRKQKPESL EDFGYEDEDG EFHFKDILLA DDHTPETAYL KDLFWEQLSI
ALDELPENQR QVFIWNELED QTFQQIADRT GENIKTLISR KRYAVRHLRE RLESVYREFV
KY
|
|---|
| |