| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4924 |
|---|
| Symbol | |
|---|
| ID | 8228530 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 5950970 |
|---|
| End bp | 5952136 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644932772 |
|---|
| Product | NusB antitermination factor |
|---|
| Protein accession | YP_003089289 |
|---|
| Protein GI | 255038668 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0781] Transcription termination factor |
|---|
| TIGRFAM ID | [TIGR01951] transcription antitermination factor NusB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0953586 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAATA GAAGATTACT AAGAACCAAG GCCGTTCAGG CTCTCTATGC GCGGCAGCTC
ACCGCCGATG CAAACCGCCT GCTGGCACTT GATCAAATCG AGGAAGCTTT TGCCCCCGAC
CTGAATTCGA TGGAATTTCA GGACAAAAAG AAGCTCTCGG GAATGAAACG CCTTGCCAAC
ATGACGCTCG ACGAGCTCAT TAAAAACGGT AAGCCGAATG ATGACGAAGA ACTTCCCGCC
CGCGTGCTGA ATGTGGCCCG GAGCGCTTTT GAAGCATACA GCCGGCAGAC TAATACGGAT
GGAGAAAAAC TCGTTAGAAG GGTTTTGAAT GAAACTGAGA CGATTTACGT CGATTTCATC
CGGATCCTGT CGATGCTGAT CGAACTGGCT CACCAGGCAA AAATCGACCG CGAGCGGAGG
TACGAAGACC CCGAGGCGCC ATTCCCGAAA GATTCGGGGC TGGATACCAA CCGGGTGATC
AAGGTTTTGC AGGGAGATAA AGCGCTGGAA GAGGAAATCA TCCGCAGCGG CATCAACTGG
TCCGACGAAA TGAACCTGAT CCGGAAAATT TACCGGGAGG CATTGCGGAA GGACGAAACC
TACGAAACAT ATTGCAAATC GGCGGCCCAC ACGCCGGAAG AAGACCAGGA GATGATCCAG
CACGTGTTGC GACAAATCAT CCTCAAACAC GAAATTTCCC TCGATTACCT CGAACAGCGC
GACCTGTACT GGGCCGATCA CGCCGAACTG ATCCGCAGCT TGGCGATCAA AACGCTGCGG
ACTGCCGACG ACGCGCATAC TTTCCAGCTC GCACCACTCA CCAAAGATTG GGAAGAAGAC
CGGGCATTTG TGGAAGAACT TTGCAAAATC GTGATCAGGG AGAGCGATCA GTACGATGTT
TATCTCGAAG ACCAATTGAA AAACTGGGAG CTCGAAAGGA TTGCGCTGGT GGACCTGATT
ATCCTCAAAA CAGCCCTCGC CGAGCTGATC CATTTCCCGG GTATCCCCGT GAAAGTCACC
ATCAATGAGT TTATCGAGAT CGCAAAAAGG TACAGTACAC CAAAAAGTGG TAAGTTTGTG
AACGGCGTCC TCGACGTGCT TTCCGTAAAA CTTGCCAAGG AAGGCGTGAT CAGAAAAAGC
GGGCGCGGAT TGATTGATAA TAAGTAA
|
|---|
| Protein sequence | MLNRRLLRTK AVQALYARQL TADANRLLAL DQIEEAFAPD LNSMEFQDKK KLSGMKRLAN
MTLDELIKNG KPNDDEELPA RVLNVARSAF EAYSRQTNTD GEKLVRRVLN ETETIYVDFI
RILSMLIELA HQAKIDRERR YEDPEAPFPK DSGLDTNRVI KVLQGDKALE EEIIRSGINW
SDEMNLIRKI YREALRKDET YETYCKSAAH TPEEDQEMIQ HVLRQIILKH EISLDYLEQR
DLYWADHAEL IRSLAIKTLR TADDAHTFQL APLTKDWEED RAFVEELCKI VIRESDQYDV
YLEDQLKNWE LERIALVDLI ILKTALAELI HFPGIPVKVT INEFIEIAKR YSTPKSGKFV
NGVLDVLSVK LAKEGVIRKS GRGLIDNK
|
|---|
| |