| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4715 |
|---|
| Symbol | |
|---|
| ID | 8228321 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 5694162 |
|---|
| End bp | 5694827 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644932564 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003089081 |
|---|
| Protein GI | 255038460 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.722326 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGATC CTTTGCTCAA CCCGGAACCG AAGCGCCCAG GGCCATTTGT GTCACCCGCA
CACGATGGCA AGGCCGCCGT AAGCGAAATT GATTCTGCGA CCTTTCTGAA ATCGGCTTTT
GAACAAAATC CGGGAAAGGG CCTGGAATTG TTGTTTAAGC GGTACTATAA CCCGCTTTGC
AGCCATGCGG TGCGATTTGT GTATTCCAAA CAGATTGCCG AAGACCTGGT AAGCGAGGTG
TTCTTCCAGT TTTACCGGAC GAAGGCTTAT GAGAATATCA CCACATCGTA CACCAGCTAT
TTGTTCCGTT CCGTGCGCAA CGAATGCTAT ACGTATATGC GCAGAGAGTT CGGGAAGACG
GATTCGCTCG AAATGAACGA GGAGCATTCG ATTTCGACCT ACCATCAGCA GCCTGATGCC
GAAATCCATT ACAACAACCT TTTCCTGAAA GTAAACGAAG TGATCGCGCG GCTCCCGATG
CAATGCCAGA AGGTGTTCCT GCTCAGCCGT TTCGAGAACA AAAAATACCA CGAGATCGCG
GATGAGCTGC ACATTTCGCC CAAAACCGTG GAAGTGCACA TTTCCAAGGC TTTGAAACAC
CTTCGCCTGG CATTGAACGG CGAATGGATG CTCCCGCTGT GCCTCACCAT TTTGAATTCC
CTCTAG
|
|---|
| Protein sequence | MHDPLLNPEP KRPGPFVSPA HDGKAAVSEI DSATFLKSAF EQNPGKGLEL LFKRYYNPLC
SHAVRFVYSK QIAEDLVSEV FFQFYRTKAY ENITTSYTSY LFRSVRNECY TYMRREFGKT
DSLEMNEEHS ISTYHQQPDA EIHYNNLFLK VNEVIARLPM QCQKVFLLSR FENKKYHEIA
DELHISPKTV EVHISKALKH LRLALNGEWM LPLCLTILNS L
|
|---|
| |