Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_4641 |
Symbol | |
ID | 8228247 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 5603857 |
End bp | 5607015 |
Gene Length | 3159 bp |
Protein Length | 1052 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644932490 |
Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
Protein accession | YP_003089007 |
Protein GI | 255038386 |
COG category | [V] Defense mechanisms |
COG ID | [COG0841] Cation/multidrug efflux pump |
TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family [TIGR01297] cation diffusion facilitator family transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0463789 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.947312 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTCAAA AATTCATTGA GCGGCCAGTG CTCTCGCTGG TCATTTCTAT CTTTATAACC CTACTCGGCG TTCTGGCTGT GCTGGAACTA CCCGTATCCC AGTTTCCCGA TATCGTACCG CCGTCGGTGG TCGTAACGGC CACCTACACC GGTGCCAATG CCGAGGTGTG CGTTGATGCC GTGGCCGTAC CGCTCGAAAA GGCGATCAAC GGGGTGCCCG GCATGACTTA CATGACCAGC GTGTCCGGTA ACGACGGTGT TACCACCATC AATATTTCAT TTAATGTCGG CGTGGACCCC GACCTTGCCG CGGTGAACGT GCAAAACCGC GTTCAGACGG TTATTGACGA ACTTCCCGAA GAGGTAATCA AGGCCGGTGT AACCACGGAA AAAGAGGTAA ACAGTATGCT CATGTACCTC GATATCATGA GCTCCGACAC CACCGTAGGC GAGGATTTTG TGTACAACTT CGCCGATATC AATATCCTCA AAGAGCTGAA AAGGATCGAC GGCGTGGGCC GCGCGCAAAT TATGGGTAGC AAAGACTACT CCATGCGCGT ATGGCTGGAA CCGGATCGTA TGAACAGCTA CAATGTCTCC GCTGACGAGG TGATCCAGGC CATCCGCGAC CAGAACGTGG TAGCGGCACC AGGTAAAACC GGTGTGAGCT CCGGCCGTGA AAAGAATGTA TTGCAATATG TTTTGAAATA CACCGGAAAA CTGTTCGAAC CTGCTCAGTA CGAGAATATC GTGCTCCGCT CGAACCCCGA CGGTTCCATT CTGAAACTGA AAGACGTCGC CAAGATCGAA TTCGGTACTT TGGAATATGA TATGGCATCG AAATCGAACG GGCGCCCATC GGCTTCGATC ATGATCAAGC AGCGCCCCGG TTCCAATGCG CAGGAAGTAA TCCAGAATAT CAAGGATAAA GTAGCCGAAC TGAAAGGCGC AACATTCCCT CCCGGAATGG ATTATTTCGT TTCCTACGAC GTTTCGCGCT TCCTCGATGC CTCCATTCAC GAGGTTATTC GCACGCTCAT CGAGGCATTT ATTCTCGTAA TCCTCATTGT GTATTTGTTT TTGCAGGACT TCCGCTCCAC GCTGATCCCG GCCCTGGCGG TGCCGGTGGC ATTGGTCGGT ACGTTTGCTT TCATGCAGCT GTTTGGATTC TCGATTAACC TGCTTACGCT TTTTGCATTG GTACTTGCAA TTGGTATTGT CGTCGATAAT GCCATTGTGG TCGTCGAGGC AGTGCACGCC AAGATGGCCG AAAAGCACCT GAACGCCTAC GAGGCGACCA TCGAATCGAT GAAGGAAATG AGTGGCGCAA TCATCGCGAT CACGCTGGTA ATGTCGGCCG TATTCGTACC GGTGGCATTC ATGTCCGGGC CGGTCGGGAT ATTCTACCGG CAATTTTCGA TCACCCTCGC CATTTCCATT GTCATATCGG GTATCAATGC CCTTACGCTC ACGCCGGCAT TATGTGCGCT GATGTTGAAG AATACCCACG GGCAGCCTGT AAAAAACAAT CCTCTGACAA GATTTTTCAA CGGGTTCAAT AAAGGCTATA ACGGCGTTCA GAGCGGTTAC CGCAAACTGC TGACCGCGAT CGTGGGCCGC CGGATGATTA CGATCGGATT GCTCATCGGT TTCTGTGTAG CTACATTTGG CATTAACACC ATTCTCCCGA GCGGATTTAT CCCTACCGAA GACCAGGGCG TAATCAACGT GAACGTAACG ACGCCCGTAG GCGCAACCGT CGAACGGACC GAGGTGGTGC TGGATGAGAT CCAAAAAGTA GCGGAGAGCC TCGAAGCCGT CGAATCGGTA TCCTCACTAT CGGGTTACAG CCTTCTCACC GAATCGGCCG GTTCGTCGTA CGGTATGGCG ATGATCAACC TGAAACCCTG GGATCAGCGG AGCGTTTCGG TGCAGGACAT TATCAGGGAA ATGGAAGCCA AAACCAAGCA CATTAAAGAT GCGGAGATCC AGTTCTTCCC GCCTCCTACC GTGCCCGGGT TTGGTAACTC TTCCGGTTTC GAGCTGCGCT TGCAGGACCG CTCCGGTAAC GAAGACCTTC AAAAAACGGC CGAGGTCACC AATAAGTTTG TCAAAGACCT CATGGCCACG CCCGAGATCG CTGCGGCATT CAGTAGCTTC GATGCGAGCT TCCCGCAATA CCTGATCCAC GTCGATTCGG ATATTGCAGC CAAAAAAGGC GTTTCCATCG ACGTCGCAAT GAGCACGCTC CAAACGATGA TCGGTAGCTA CTACGCATCC AACTTCATCC GTTTCGGGCA GATGTACAAG GTAATGGTGC AAGCCGATGC GAGCTTTCGT AAAAACCCGG AAGACATTCT CAAATTGTAT GTCAAAAACA ACCGGGGCGA AATGGTGCCG TTCTCGACAT TCATCCGACT TGAAAGGGTA TACGGCCCTG AGCTGCTCAC GCGTTACAAT ATGTACACGT CGGCGATGAT CAACGGTGAC GCTGCGCCCG GTTTCAGTAG CGGTGACGCC ATTAAAGCAG TGGAGCGCGT AGCGGCTACC AGCCTTCCGA AAGGTTACAC CTACGACTGG TCGGGTATGA CGCGTGAAGA AATCCTGTCG GGCAACCAGG CTGTGTTCAT CTTCGCGATC TGTCTCATAT TCGTGTACCT GTTGCTAGCG GCACAGTATG AAAGTTTCCT GCTACCGCTG CCGGTAATCC TTTCCTTGCC CACAGGGGTG TTCGGTGCAT TCCTTGCATT GAAACTGATG GGATTGGAGA ACAACATTTA CGCACAGGTT TCCCTGGTCA TGCTAATTGG TCTTTTAGGT AAAAACGCGA TCCTGATCGT TGAATACGCC ATTATCCGGC AGAAAGAAGG CCGAACGGTG ATCGAGGCGG TGCTGGAAGG TGCCACGGAA CGTCTGCGTC CGATCCTGAT GACCTCTTTT GCATTCGTCG CGGGACTTAT CCCGCTCGTA ATGGCCTCAG GTGCAGGAGC AATCGGGAAC CGGTCCATCG GGGCTGCGGC TGCCGGCGGG ATGCTCATCG GTACCATTTT CGGGGTGATC ATCATTCCGG GCTTGTATGT GGTATTCGCG GGCATGGCCA GGGAGAAAAA AACACCCCCT CCGGTAGTGG CGACGGAGGA AGAGGCAATG CTGCACTAA
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Protein sequence | MFQKFIERPV LSLVISIFIT LLGVLAVLEL PVSQFPDIVP PSVVVTATYT GANAEVCVDA VAVPLEKAIN GVPGMTYMTS VSGNDGVTTI NISFNVGVDP DLAAVNVQNR VQTVIDELPE EVIKAGVTTE KEVNSMLMYL DIMSSDTTVG EDFVYNFADI NILKELKRID GVGRAQIMGS KDYSMRVWLE PDRMNSYNVS ADEVIQAIRD QNVVAAPGKT GVSSGREKNV LQYVLKYTGK LFEPAQYENI VLRSNPDGSI LKLKDVAKIE FGTLEYDMAS KSNGRPSASI MIKQRPGSNA QEVIQNIKDK VAELKGATFP PGMDYFVSYD VSRFLDASIH EVIRTLIEAF ILVILIVYLF LQDFRSTLIP ALAVPVALVG TFAFMQLFGF SINLLTLFAL VLAIGIVVDN AIVVVEAVHA KMAEKHLNAY EATIESMKEM SGAIIAITLV MSAVFVPVAF MSGPVGIFYR QFSITLAISI VISGINALTL TPALCALMLK NTHGQPVKNN PLTRFFNGFN KGYNGVQSGY RKLLTAIVGR RMITIGLLIG FCVATFGINT ILPSGFIPTE DQGVINVNVT TPVGATVERT EVVLDEIQKV AESLEAVESV SSLSGYSLLT ESAGSSYGMA MINLKPWDQR SVSVQDIIRE MEAKTKHIKD AEIQFFPPPT VPGFGNSSGF ELRLQDRSGN EDLQKTAEVT NKFVKDLMAT PEIAAAFSSF DASFPQYLIH VDSDIAAKKG VSIDVAMSTL QTMIGSYYAS NFIRFGQMYK VMVQADASFR KNPEDILKLY VKNNRGEMVP FSTFIRLERV YGPELLTRYN MYTSAMINGD AAPGFSSGDA IKAVERVAAT SLPKGYTYDW SGMTREEILS GNQAVFIFAI CLIFVYLLLA AQYESFLLPL PVILSLPTGV FGAFLALKLM GLENNIYAQV SLVMLIGLLG KNAILIVEYA IIRQKEGRTV IEAVLEGATE RLRPILMTSF AFVAGLIPLV MASGAGAIGN RSIGAAAAGG MLIGTIFGVI IIPGLYVVFA GMAREKKTPP PVVATEEEAM LH
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