Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_4640 |
Symbol | |
ID | 8228246 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 5602344 |
End bp | 5603789 |
Gene Length | 1446 bp |
Protein Length | 481 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644932489 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_003089006 |
Protein GI | 255038385 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.134009 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAGAA ATTTCAAGCA TATATACGGT TTGCTATTCC CTGCAATCCT GATCACCGTA TCGGGTTGTA AACTGACGCA ACCCGTCGAG CAGCGCGCAC AGATCAAAAC ACCGGAAACC TTCGCGGGGC AGGCCGATTC CACGGGCGTT GCTTCGCTGC AATGGAAAAC GTTCTTCAAC GACCAGCACC TGGTCGCGTT GATCGACACC GCTTTGCAGA ACAACCTCGA CCTCAAAATG GCCGTCCAGC GCATTGAAAT GGCCAGAACC AACATCATGA TCGCCCACGG CGCAATGCTA CCCTCCGTGA CCGGCGATGT GTCGGGCGGC GGTCGCAAGT TCGGGGATTA CACGATGGAC GGCGTAGGTA ACTATGATAC CAACTTCTCC AGCAATCTCG ACGACGACCG GCGTCTCCCC GCCCCTTTCC TGCCCGATTA CTTCCTGGGG TTGAGAAGTT CGTGGGAAAT TGATATTTGG GGTAAACTCA AAAACCAGAA GAAAGCTGCA TACACGCGTT TCCTGGCAAG CGAAAAAGGC CGCCAGGCGA TCGTAACCGG CCTGATAGCT GAAATCGCAC GTTCCTACTA CGAATTGCTG GCGCTGGACA CCGAATTGGA CATCATTCAG AAGAACATCG ACTTGCAGGA ATCGGCGGTA GAAACGATCA AAATCCAGAA GGAAGCCGGC CGCGCCAACG AACTCGGCGT GCAGCAGCTT ACGGCACAGT TACTCAACAC GCGCAGCCTG GAATACGAAG TGCGCCAGCA GGTGGTTGAA ATCGAAAACA ATGTAAACCT GCTCGCAGGC CGTTTCCCGC AGCCTGTTAC GAGAAGCAGC GCTATGGGGC AGGCCGTTCC ACAGTCGATC AGCGCTGGTG TACCGGCGCA AATGCTGCGC AGAAGACCAG ACATCCAGCA GGCCCAGCTG GAACTGCTCG CGAACTATTC CGAACAGCAA GCCGCTCAGT TGGCGCTGCT CCCGTCGCTG AACATTACGG CTTTTCTGGG TTTCAATGCA TTTAAAAGTA ACCTGCTCTT CTCGTCGGGA TCTCTCGCGT ACAGCGCCCT CGGCGGCCTC ACCGCCCCGC TGATCAACCG GAAGGCATTA AAAGCCGGAC AAAAACGCGC CGAAGCCGCC AGCCTGGAAG CGCTTTACGC CTATAACAAA TCCGTTCTGA CTGGTTTCAG CGAGGTAAGC ACGAGCCTGA AAAAGCTGGA AAACACCCGC GAAATCGGCG AGCTCAAAAG ACAGGAAGTG GAAGTACTCC AACAAGCCGT CGCCACGTCA CAAGACCTGT TCCTGACCGG CTATGCTTCC TACCTCGAAG TAATCACCGC CCAACGCGGC GTGTTGCAGG AAGAGCTGAA CCTCACGAAT GTTCAGAAGG AACAATTTCT GGCATTGGTC GAGCTGTACC GGGCTTTGGG AGGTGGCTGG GAATAA
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Protein sequence | MKRNFKHIYG LLFPAILITV SGCKLTQPVE QRAQIKTPET FAGQADSTGV ASLQWKTFFN DQHLVALIDT ALQNNLDLKM AVQRIEMART NIMIAHGAML PSVTGDVSGG GRKFGDYTMD GVGNYDTNFS SNLDDDRRLP APFLPDYFLG LRSSWEIDIW GKLKNQKKAA YTRFLASEKG RQAIVTGLIA EIARSYYELL ALDTELDIIQ KNIDLQESAV ETIKIQKEAG RANELGVQQL TAQLLNTRSL EYEVRQQVVE IENNVNLLAG RFPQPVTRSS AMGQAVPQSI SAGVPAQMLR RRPDIQQAQL ELLANYSEQQ AAQLALLPSL NITAFLGFNA FKSNLLFSSG SLAYSALGGL TAPLINRKAL KAGQKRAEAA SLEALYAYNK SVLTGFSEVS TSLKKLENTR EIGELKRQEV EVLQQAVATS QDLFLTGYAS YLEVITAQRG VLQEELNLTN VQKEQFLALV ELYRALGGGW E
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