Gene Dfer_4577 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_4577 
Symbol 
ID8228181 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp5521952 
End bp5524240 
Gene Length2289 bp 
Protein Length762 aa 
Translation table11 
GC content53% 
IMG OID644932424 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_003088943 
Protein GI255038322 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.657251 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAGCAAC TGGTTGAATC CCTCAACATT GACCTGGAAC AGGAGCGTAA GGATATCCTC 
AAAAAATACC GCCGGCTTTT AAGAACAGCT AAGCCATTTT TAAAGGATAA TGATGCTAAA
TTAATCAAAA AAGCCTTTTA TACTTCCGTT GACGCGCATA AGGACATGCG CCGCCGGTCG
GGAGAGCCAT ATATTTACCA CCCGCTCGCG GTGGCGCAGA TCGTGGTTGA GGAAATCGGG
CTGGGTACCA CCGGCATCGT GGCGGCATTG CTGCATGATG TGGTGGAGGA TACCGATATG
GGGATCGACG ATATTGAAAG ACTTTTTGGA AAAAAAGTCG CGAAAATTAT CGACGGGCTG
ACCAAAATTT CGGGCCGTTT TGAATACGGG TCGTCGCAGC AAGCCGAGAA CTTCCGCAAA
ATGCTGCTCA CGCTTTCGGA CGACGTGCGG GTAATCCTCG TCAAGCTCGC GGACCGCCTG
CACAACATGC GTACGCTCGA CAGCATGCCG CGCGATAAGC AGCTCAAAAT CGCTTCCGAA
ACGATATTCA TCTACGCGCC GCTTGCGCAC AGGCTGGGTT TGTACAGCAT CAAGTCGGAG
CTGGAAGAAT TGTATTTGAA ATACACCGAA CCCCAGGAAT ACCGGGCCAT TGCGAGGAAG
CTGAGAGAGA CTAAAAATAC CCGTGACCGC TTCATTTCGA AGTTTATGGA GCCGATCGCG
CAGGACCTGG AATCGGTGGG GTTGAATTTT ATCCTCAAAG GCCGTCCCAA ATCAATATAC
TCGATCTGGA ACAAAATGCG GAAGCAGAGC AAGCCGTTCG AGGAAATATA TGACCTGTTC
GCAATCCGCA TTGTGCTCGA ATCGCCGCCG GAAAGCGACC GCGAAAAGGC GATCTGCTGG
CAGGCGTATT CCATTGTTAC CGACCATTAT AAGCCCAACC CGGACCGTTT AAAGGACTTT
TTGAGCACGC CGCGGGCGAA TGGCTACCAA TCCCTGCACT CCACGGTGAT GAGCAAGAGC
GGCCAATGGG TGGAGGTGCA GATCCGCACC TCGCGCATGG ACGAGATCGC CGAGAAGGGT
TACGCCGCGC ACTGGAAGTA CAAGGGAAAT GATACCAAGG TGAAAGGTAA TATCGAAACC
TGGATCACCC AGGTGCGGGA AACATTGGAG AATGGATTTG GGGACAAAAC GGCCGCTATC
GAGTTTCTGG ACGAGTTTCG CAGCAACCTT TTCAATGAGG AGGTATTTGT ATTTACCCCA
AAAGGCGAGC TGAAAGTATT GCAGGCAGGT TCAACTGCGC TGGACTTTGC ATTTGACATT
CACTCCGAAG TAGGCGCGCA TTGCATGGCC GCCAAAGTGG GCGGTATCCT AGTGCCGATC
AGCTATGTGC TAAACAATGG CGATCAGATC GAGATCATCA CGTCCGGCAA GCAGAAGCCG
AACGAGGATT GGCTGCGCAT TGTGGTCACT TCCAAAGCCC GGGCGCGGAT CAAGGATTTT
CTGAAAGAGG AAAACCGCCG GTACGAAACG GATGGGCGCC AGTTAGTGGA GAAAAAGTTG
AAAATACTGG GCGTGGACGC CACCGCGGAG GTAATGAACC AGCTCCGGGC GTTTTTTGAA
TGCAAAACGA CGACGGATTT CTTTTACCGC ATCGGCAAAG GCTACATTCC CATCGACGAC
CTCAAACGCT TCAAGCGCGA CCGCGATGCG AAGGAGAAAA AGGCCGCCGA GAACGGCGCA
GCGAGCAATA CACCGCCCGC AGCCGGCAGC GATGGCAAAA CGCTGACCAA ATATTTGAAA
CAAATCCACG GCGACCGTGC AGATAATGAC ATGCTGCTCA TCGGCGACGA TATGGATAAA
ATAGATTACA AGCTAGCTCA GTGCTGCAAC CCGATCGCCG GTGACGACGT GTTCGGCTTC
GTAACCATCA ACGAAGGCAT TAAAATACAC CGCACCACCT GCCCCAATGC GGCCGAGCTG
ATGTCCAAGC ACGGCAACCG CATTATCAAG GCCAAATGGT CGGGTAAGGA AGAGGCGTTC
CTGGCGGGGC TGTACCTTTC AGGCACCGAT CGCGTCGGCC TGGTGAACGA TGTCACGCGG
ATAATTTCCA ACGAGCTGCA CATCAATATG CGCGGGCTCA CGATCGATAC GAAAGACGGC
GTTTTCAACG GCGATATCAA ACTTTATGTG CAGGATACGA GGCACCTGGA CATCCTGATC
GCCAAGCTGG AACAGGTGGA AGGCGTGTAC AATGTGCAGC GTTTCGACAC CAACCTGGGC
GGCAAGTGA
 
Protein sequence
MEQLVESLNI DLEQERKDIL KKYRRLLRTA KPFLKDNDAK LIKKAFYTSV DAHKDMRRRS 
GEPYIYHPLA VAQIVVEEIG LGTTGIVAAL LHDVVEDTDM GIDDIERLFG KKVAKIIDGL
TKISGRFEYG SSQQAENFRK MLLTLSDDVR VILVKLADRL HNMRTLDSMP RDKQLKIASE
TIFIYAPLAH RLGLYSIKSE LEELYLKYTE PQEYRAIARK LRETKNTRDR FISKFMEPIA
QDLESVGLNF ILKGRPKSIY SIWNKMRKQS KPFEEIYDLF AIRIVLESPP ESDREKAICW
QAYSIVTDHY KPNPDRLKDF LSTPRANGYQ SLHSTVMSKS GQWVEVQIRT SRMDEIAEKG
YAAHWKYKGN DTKVKGNIET WITQVRETLE NGFGDKTAAI EFLDEFRSNL FNEEVFVFTP
KGELKVLQAG STALDFAFDI HSEVGAHCMA AKVGGILVPI SYVLNNGDQI EIITSGKQKP
NEDWLRIVVT SKARARIKDF LKEENRRYET DGRQLVEKKL KILGVDATAE VMNQLRAFFE
CKTTTDFFYR IGKGYIPIDD LKRFKRDRDA KEKKAAENGA ASNTPPAAGS DGKTLTKYLK
QIHGDRADND MLLIGDDMDK IDYKLAQCCN PIAGDDVFGF VTINEGIKIH RTTCPNAAEL
MSKHGNRIIK AKWSGKEEAF LAGLYLSGTD RVGLVNDVTR IISNELHINM RGLTIDTKDG
VFNGDIKLYV QDTRHLDILI AKLEQVEGVY NVQRFDTNLG GK