Gene Dfer_4463 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_4463 
Symbol 
ID8228066 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp5385935 
End bp5387431 
Gene Length1497 bp 
Protein Length498 aa 
Translation table11 
GC content52% 
IMG OID644932309 
ProductLytic transglycosylase catalytic 
Protein accessionYP_003088829 
Protein GI255038208 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1388] FOG: LysM repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.689594 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.530069 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTCCAC AGGAGAGTTT GACTTCCGGG CAGGATACAG TTGAGAGTAT TGCTCAGGAA 
GAAGGTGATT TGATGCCGTC ACTTCCGGAG GTTGAGGAGA TCGGACCGAA CCCCGCGGTT
CCGGAGCAGC TTTTGAAAGA ACGCTTCGCA AAGCTCGAAA AGTCGATCCC GCTCACTTAC
CACAAATCGT CCCATGAATT CGTAGAGTAT TTTATCTACA AAAAAGCGCA TTTCACACGG
ACGATGATGG AGCGTATGCC GCTCTACTTC CCGCTTTTTG AAAAAGCATT GGCCAAACAC
GGCCTGCCTA CCGAACTGAA ATACCTTTCG ATGATCGAGT CGGGATTGAA CCCGACTGTG
ATTTCCCATG CCCGTGCAGG AGGTCTCTGG CAGTTTATGC CGGCTACCGG ACGGGAATTC
GGTCTTTATC AGGATAAATA CATCGACGAG CGTTTCGAAC CGACCAAAGC TACCGAAGCG
GCTTGTTTGT ATCTGAAACA GCTTTACAAG ATCTTCGGCG ACTGGGAGCT TGCATTGGCT
TCGTATAATA CCGGCCCGGG CAATGTGAAA CGCGCCATGC GCCGCTCGCG CGGGACGACC
TTCTGGACGA TCTACAACGT CCTTCCCCGC GAAACCCGTT CCTACGTGCC GCAATATGTG
GCTATGAACT ACATGATGAA CTACGGCTAC GACCACGGCA TTTTCCCCGA AAACACAGAA
TTCCAGATCC CGAACGATAC CATTCACATC AATGGCTACA TTGATCTCGC CACATTCTGC
GACAATGCAA GCATTGATTT TGAAATCCTT AAAAAACTGA ATCCGCAAAT CACCAAAAAA
GTCCTCCCGG ACCAGACGCG TGATTTTGTG CTCAAAGTGC CGAGCGTACG CTTTACCTAC
CTGATGAGCA ACCGCGCCTC GATCATGGAC TCCTGCACCA GAAGGCTTCT GTCTAATGGC
GTAATGGTAG CCAAGGCCGA CAGCACGAAA ACTGACTCGA TCGGAGGCAA CGGCGCATTC
CCTTACGTAC TCGCTTCCAA TGTCCAGAAT GTGTCGGACG ACGAATCCTA TGACGAAGAA
GGCGAAGAAG AGGTAGTTCA GCGCAGCCGC ACCAAACGCG TGTCATATAC CGTGCGCCGT
GGCGACAATG TGGCGAGCAT TGCCCGGAAA TACGGGGTTT CGGTGGCATC ACTGAGAAAA
TGGAACCACA TCCGCCGCAA CATGATCCGC CGCGGACAAC GGCTCGTCAT TTACAAGGAA
GTGCGCGAAA CTGCACCAGC AGCCCGCATT GCGGCGAAGC CCCGGCCACA GCAGAAAGAA
GAGCAGGTGG CCAACCAGCA GCGTCATACC CGGAAACGTT ATCATACCGT ACAAAAAGGA
GATACATTAT GGATTATTTC GCAGCGCTAC GGTCTGGAAA TCGGTCAGCT AAAGAAACGG
AACAAAATCA GGGGCAACTC GATCAAGCCG GGCCAGAAAT TGATTATTTC TACCTAG
 
Protein sequence
MVPQESLTSG QDTVESIAQE EGDLMPSLPE VEEIGPNPAV PEQLLKERFA KLEKSIPLTY 
HKSSHEFVEY FIYKKAHFTR TMMERMPLYF PLFEKALAKH GLPTELKYLS MIESGLNPTV
ISHARAGGLW QFMPATGREF GLYQDKYIDE RFEPTKATEA ACLYLKQLYK IFGDWELALA
SYNTGPGNVK RAMRRSRGTT FWTIYNVLPR ETRSYVPQYV AMNYMMNYGY DHGIFPENTE
FQIPNDTIHI NGYIDLATFC DNASIDFEIL KKLNPQITKK VLPDQTRDFV LKVPSVRFTY
LMSNRASIMD SCTRRLLSNG VMVAKADSTK TDSIGGNGAF PYVLASNVQN VSDDESYDEE
GEEEVVQRSR TKRVSYTVRR GDNVASIARK YGVSVASLRK WNHIRRNMIR RGQRLVIYKE
VRETAPAARI AAKPRPQQKE EQVANQQRHT RKRYHTVQKG DTLWIISQRY GLEIGQLKKR
NKIRGNSIKP GQKLIIST