| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4269 |
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| Symbol | |
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| ID | 8227872 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 5169759 |
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| End bp | 5172875 |
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| Gene Length | 3117 bp |
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| Protein Length | 1038 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644932116 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_003088636 |
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| Protein GI | 255038015 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.927077 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.139586 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGA AAACTACTCC TTTGCGTGTA GCGCCGTCCG GCGTTATACC CCATTCTTTT
TTGCCTCAGC TCATCATTTT CCTGCTCTTT TCGGTCGCCA CGCTGGCGGC CGGCCCCAAG
GATAAAACCA TCAAGGGCAA GATCACCGAT TCCGAAAACG GCTCGGCACT ACCCGGTGTG
AACGTCATCG TGAAAGGCAC CAGCCAGGGT ACCTCCTCCA ATTCGGACGG GAATTATGAA
ATTAATGTGA ATGACAATAG CGCAGTTCTG GTTTTCAGCT TCGTTGGCTA CGAAAAAGTG
GAGGTGCCCG TGGGTGACCG CACCACCGTG GACGTGACCC TGAAAGTGGA CAGCAAAAGC
ATGGATGAAG TGGTGGTGAT CGGTTACGGA ACCGTCCGTA AAAGCGATCT TACCGGCTCG
GTGGGTGCCA TTAAAGGCGA AAAGCTGCTC GACAGGCAGG CGACCAACGT AGCGCAATCG
TTGCAGGGAC GTATTCCCGG TGTGGACGTG GCGGTCAACT CCTCCGCTCC GGGGTACCAG
CCGCGGGTGC GCATACGTGG GGTAGGCTCC ATCAATTCGA GCCTTGAACC GTTGTATGTG
ATCGACGGTA TTGTGGGCGT GAGTAACCCC AACCTACTCA ATCCCAACGA TATAGAGTCA
CTGGAAGTAC TGAAAGACGC ATCGGCAACG GCCATTTACG GCGCACGCGG CGCCAACGGG
GTGATTATCA TTACCACCAA ACGCGGCAAA TCGGGCACCA CCCAGATTTC CTACGACGTG
TGGGGCTCCT ACATTACGCC GGCCAGCCGC CTGGGAACAC TCTCCGCCGA CGAGTTTATG
CAGGTATACA ACACGGCTTA CGACAATGCG GCGAAGTTCG ATGAGCAGGG CTTCAAAGAC
GGCAAATATG TGCGCAACCT GCCCGCCAAT TTTCCTAACC TGTTCGACGC CAACGGCAAG
CCGAAATACA ATACCGACTG GGAAAAGGAA ATTTACAAAC CTACCTGGGC ACAAAACCAC
GAGCTGGCCG TGCGCGGCGG CGGTGAAAAA AGCGCTTACA GCATTTCGGT GGGCTATACA
GACCAGGGCG GTCTGATGCG GAATTCAAAT CTGACGCGTT ACTCGGCCAA GCTGACGCTC
GATAACGATG CTACCAAATG GCTGAAAGTG GGCGGCAGCA TTTTTATCAA CAAGGCGCTG
ATCAAGGAAG TCGACGGCGG ATCGGGCGGG TTGAACGTGC CGCGGATGGT GTTCGAGGCC
GTTCCTATCC TGCCTATCAA ATATCCCGAT GGCAGCTGGG GACGCAACAA GGATTGGCCG
GGCATGGAAG GCGGAGAAAA CCCCGTCCGC ATTGCCGACC AACGTACACA AACCAACCCC
CGCACCGAAA TCCTGGGTAG TTTGTATTCC AATATCAAGT TCACTCCGGA CCTGAGCCTG
CGTACGAATT ACAGCTATGA ATTGCGGTTT GATAAAAACA ATTTCTACTC CGGCCGCGAT
CTGAATGCGT TATCGGCAGA TCAGAAGGGG TCAGCGAGCA TTTCGGCCAA CAACGAGTTT
TACTGGCAGT TCGAGAATTA TTTTAATTAC AACAAAACCA TCGGCGACCA CAACATTTCC
GCATTGCTCG GTTTGTCGTG GCAAAAACGC TCCTGGGAGA ACTTCGGCGT GACTGCGCAG
AACTTCATCG ACGATTTCTG GGGCTGGCAT AATATCAACG TCGGTAACAC GCTCGTGAAA
CCGAATTCGA GTGATCAGGA ATGGTCGCTG AATTCCTACT TCGGCAGGTT GAATTACAGC
TTCAAAGACC GCTACCTGCT TACTTTCACG GGCCGTTACG ATGGCGCGTC GAAATTTGGG
GTGAACAATA AATATGCATT TTTCCCTTCG GCGGCCATTG CGTGGAACGT GACGAACGAA
GAGTTCCTGA AAAGCAACGC CACGCTCACC AACCTGAAAA TCCGGGCAAG CTATGGTAAA
ACCGGTAACC AGGAAATCGG GCAATATGCG TCGCAGCAGT TCCTCGGAAC GAGCGATGTG
CTCCTGGGCG GCTCGCGGCA GACGTTCGTG TGGCGGAGCT CGTTCGGTAA CCCCGATTTG
CGCTGGGAAT ATACCAACCA GCTGGATATC GGTGCGGACA TCGGCCTGTT CAACAACCGC
ATCGACCTGA CTTTTGATTA CTACAAAAAA GTAACCAAAG ACCTGCTCCT GAATGCGCCC
ATTCCCTGGT CGACCGGCCT GGGCTCCGTA ACGCAGAACA TCGGCTCGGT GCAGAACACC
GGTATCGAGA TCGGCGTCAA CAGCCGTAAC ATTTCCACCG AAAAATTCAC ATGGAGCACC
AACGTCGCAT TCTCTGCCAA CAAAAATAAA ATACTGAAAC TCGGCCGCAA CGGCGACGAC
ATTTTCCCGG GTCCTAACTT CCTCGGCAAT ACCAACATCC TGCGCATCGG GCACGCGATC
GGTACACTGT GGGGTTACCG CCGCCTGGGC ACATGGGGCA CCGCCGAAGC CGATGAAGCA
GCGAAATACA ACCGCCTGCC CGGTGATCTG AAATGGGAGG ATATCAACAA GGACGGCAAA
ATCGACGGCA AGGACGAAAC CATTATCGGC CGCTCCTACC CGAAATGGAA CCTGAACGTT
TCCAACACAT TCCAGCTCGG CAAGTTCGAC CTTTCGTTCG ATATCCGCAT TGTGATGGGC
GTAAACACCG TGAATGCCAC CAAGCACTCC GTGGAAGACC GGCAGGCCAT CGCCAGCAGC
TCCCGCTCGG TACTCAACGC CTGGACGCCC GAGAACCAGA ACACGCACAT CGCGCAAATC
CGCCATTACA ATGCCGGCTA CGATACGCAC ATGGACGACT GGTGGGTGGA AGACGGCTCG
TTTATCCGCG GCCAGAACAT CGTGCTCGGC TACTCGCTGC CGACCAAGTT CGGAAAGGTT
AATTTCCAGC GCCTGCGCAT TTATGCGAGC GCGCAGAACT TCTTCCTGAT CGACAACTAT
TCGGGTTACG ATCCGGAGGC GCTCACAGGT TTCGGCGGAC AGCTGAATGC GAATATGGAG
TTCTTCCAAT ATCCGCGTCC GCGCACCTAC AACCTCGGTT TGAACATTGT TTTTTAA
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| Protein sequence | MKKKTTPLRV APSGVIPHSF LPQLIIFLLF SVATLAAGPK DKTIKGKITD SENGSALPGV
NVIVKGTSQG TSSNSDGNYE INVNDNSAVL VFSFVGYEKV EVPVGDRTTV DVTLKVDSKS
MDEVVVIGYG TVRKSDLTGS VGAIKGEKLL DRQATNVAQS LQGRIPGVDV AVNSSAPGYQ
PRVRIRGVGS INSSLEPLYV IDGIVGVSNP NLLNPNDIES LEVLKDASAT AIYGARGANG
VIIITTKRGK SGTTQISYDV WGSYITPASR LGTLSADEFM QVYNTAYDNA AKFDEQGFKD
GKYVRNLPAN FPNLFDANGK PKYNTDWEKE IYKPTWAQNH ELAVRGGGEK SAYSISVGYT
DQGGLMRNSN LTRYSAKLTL DNDATKWLKV GGSIFINKAL IKEVDGGSGG LNVPRMVFEA
VPILPIKYPD GSWGRNKDWP GMEGGENPVR IADQRTQTNP RTEILGSLYS NIKFTPDLSL
RTNYSYELRF DKNNFYSGRD LNALSADQKG SASISANNEF YWQFENYFNY NKTIGDHNIS
ALLGLSWQKR SWENFGVTAQ NFIDDFWGWH NINVGNTLVK PNSSDQEWSL NSYFGRLNYS
FKDRYLLTFT GRYDGASKFG VNNKYAFFPS AAIAWNVTNE EFLKSNATLT NLKIRASYGK
TGNQEIGQYA SQQFLGTSDV LLGGSRQTFV WRSSFGNPDL RWEYTNQLDI GADIGLFNNR
IDLTFDYYKK VTKDLLLNAP IPWSTGLGSV TQNIGSVQNT GIEIGVNSRN ISTEKFTWST
NVAFSANKNK ILKLGRNGDD IFPGPNFLGN TNILRIGHAI GTLWGYRRLG TWGTAEADEA
AKYNRLPGDL KWEDINKDGK IDGKDETIIG RSYPKWNLNV SNTFQLGKFD LSFDIRIVMG
VNTVNATKHS VEDRQAIASS SRSVLNAWTP ENQNTHIAQI RHYNAGYDTH MDDWWVEDGS
FIRGQNIVLG YSLPTKFGKV NFQRLRIYAS AQNFFLIDNY SGYDPEALTG FGGQLNANME
FFQYPRPRTY NLGLNIVF
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