| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4223 |
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| Symbol | |
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| ID | 8227826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | - |
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| Start bp | 5107095 |
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| End bp | 5110133 |
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| Gene Length | 3039 bp |
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| Protein Length | 1012 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644932071 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003088591 |
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| Protein GI | 255037970 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000201846 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.958019 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAAAT CAATTCTACG TTTTGATCGT CCCTACGAGA AGAACGTGCA AGGACCCGCG
TCCCTGAGGA TGTGCGGATT GGGCATATTG CTACTCTTAT GCACCCTGTT TTTCAATAAT
GCACATGCCC AGGACGTCGC CCTCAAAGGC AAAGTGACCG ACTCCAAGGG AAATGCCCTG
CCGGGTGTTT CCATCACCAT TAAGGGAACT ACCAAAGGAA CTTCCACCGA CATGGAAGGT
GGCTACGCGA TCTCCGCGCC GCCTGCATCC ACATTATCAT TCAGCTTCAT CGGTTTTTCA
TCCAAAGACG TCGTAGTAGG CAATGAAACG ACGATCGACG TGGTGCTCAG CGACGACGTG
AAAGCGCTCG AAGAGGTGGT CGTGATTGGC TACGGCGCCG TGAAGAAGAA GGATGTGACG
GGTTCCGTGG TTTCGCTGCA ACCGAAAGAC TTCAACAAAG GGGTGATCAC AGCGCCGGAC
CAGCTCATTC AGGGCCGGAC GCCGGGTGTG ATGGTGATCA ACAACACGGG CCAGCCCGGC
GGTGCAACCA CCGTCCGCAT CCGTGGTAAC TCCTCGATCC GCGCCGGTAA CAACCCGCTG
TTCGTACTCG ACGGAATCCC GCTTTCGGGT AGCTCGGCCC GTCCTGGCGG AAGCGGCGGC
TTCGGCTCCG ACGGCGGTAA CCCGCTCGCT TACCTCAACC CGAACGACAT CGCGAGCATG
GACATCCTCA AAGATGCCTC GGCAACGGCC ATTTACGGGT CACGTGGTGC CAACGGTGTG
GTGATCATCA CCACCAAAAG AGGAGCTTCC GGAGCGCCTA CCGTGAGTTT CAATGCTTCC
ACCGGCGTAT CCAGCCTGCT TAGAAAGCCG GAGGTGCTCA ATGCCGACGA GTTCAGACAA
GCCGTTCAGT TCTACGCACC CAATGATCTG AAAGGCGCTG ATTTCGGTGG AAATGTGAAT
GCATTCGATG AAATCACACG CGTAGCACCG GTTCAGAACT ACTCGATGGC GATCACCGGC
GGTACGGATA ATGGTAAATA CCGGGTATCG GCCGGCTATA TGGACCAGAA AGGGATCATC
GAAACATCTC GCCTGAAAAA GTACACAGCC AGCCTGAACA CGAGTTTCAA GTTCCTTGAA
AGCAAAAAGC TGGGACTGGA CTTCAATGTA TTGTTTACGC AAACGGACGA AAACCTTGCG
CCGATTGACG TAGGTGTCGG TTTTGAAGGA AACGTAATTT CTCAGGCGCT TACCTGGAAC
CCCACCCGCC CACTGCGCGT GAATTCCGAC TCGCTGACTT ACGTGAGCCC TTCGACGATC
AACCCGCTCG CATCGCTGCA AGCCTACAAG GACATTGCGG TGGTGAATAC CACGGTGGCC
AGCATTGCGC CTTCGTACAA GATCACCAAC GACCTCGAGT ACAAACTCGT GTACAGCATT
ACCCGCCAGA CAGGTACGAG AAAGGGACGT TACATCCGCG GCCTCATCGA CCCGGCACAG
ATCCGCAACG GCTTTGCATT CATCGGCAAC AACTCCGAAA CGAACCAGCA GCTCACCCAT
ACGCTGAGCT ACAACAAGGA TATCAGCACC GACCTGAATA TCAATGCAGT AGCAGGTTAC
GAATTCCTGG ATTATGCCAA TAGCTGGAAC GCCCTGAGCG GTAGCGGATT TACGGATGTC
GGCCTGGATT TTTACGATTA CCTCAACTAT TCGGTGGCCA GCAACCGGGG TGTAAACTCT
TTCAAATCGC CTACCAACCA GTTGCAATCG TTGTTCCTAC GGGTTGGTTT GAATTATATG
GATAAATACC TCTTCACCGG AACGGTCCGG AGAGATGGTT CGACCAAATT CGGGGAGAAT
AACAAATACG CAAACTTCCC TGCGGTGGCG CTTGCCTGGA ATGTGTCGAA CGAAGCATTC
CTGAAAGGCA ACAGCACGCT CAACAACCTG AAAGTGCGTT TGGGCTGGGG TAAAACCGGT
AACCGTGAGT TCGACTCAGG TGCATCGAGA AACCGCTATA TCTTCGACGT GCAGAGTGTG
AGCCAGGCGA ACTTCGGTAA CCCCGACCTG AGATGGGAAA GCTCAGAGAC ATTCAACGGA
GGTATCGATT TCGGCTTGTT CCAATCGCGG ATCGTCGGTT CGATCGACGT TTTCCGCAAG
AAAACTACCG ACGGTTTGTT CGAGAGAACA CTGGCCCAGC CTGCGCCAAG CGGTAAAATC
TGGGTAAACC TGGACGGCGA GGTGATCAAC AAAGGTGTGG AAATTGCCCT GACTGGTACG
ATCCTGGAAA ACAAGGACTT TACCTGGAAC CTCTCGGCCA ATGCGACTTA CCTGAAAAAC
AGCGTTTCCG GCCTGCCCGG CTTCTACGAA ACTGCCCAGC TGAGAGGACA AGGCTTCTCG
GGTGTGCTTG GACAAAGAAT GGTGAGCGGA CAGCCCCTCA ACGTGTGGTA CCTGGCCAAA
TACGCCGGTC TTGATCCGGC AACCGGAACG AGCATGTACG AAGGAGCGGA CGGTAACGCC
AGCACCACCG TGGACCCTGC TCAGAACAAG TTTTACGTAA ACAGCCCTAA CCCTAAATAC
CTGCTGGGCG TGTCTACGGA CGTGACTTAC AAGAAGTTCT CGGCAGTGGT GAACATGAAT
GGCGCATTCG GACATTATTT GTTCAACAAC ACTTTCGCGA CTGTACTGGG TATCAACAAC
CTGTCGACGA AGAACATCGC CAAGGAATTT TTCAACACGG ATATCAAAGA AGCAACGTCC
AACTCCGCAG CGCCATCGAC GCGCTACCTG GAAAAGGGCG ATTTCATGAA AATGTCTAAC
GTTACGCTAA GCTACCGCGT CGGAAACATC GGAAAAGCCT TCAAAAACCT GAACATCTCA
CTGACGGGCC AGAACCTGTT TGTGCTCACA GGCTACAAAG GTTTCGACCC CGAGGTGAAC
ACCGACGGTT CAAGCGGCGG AATTCCTTCC CTTGGTATCG AGTACATTCC TTATCCATCG
GCAAGAACAT TCCTTTTGGG CGTAAACTTT TCGTTGTAA
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| Protein sequence | MMKSILRFDR PYEKNVQGPA SLRMCGLGIL LLLCTLFFNN AHAQDVALKG KVTDSKGNAL
PGVSITIKGT TKGTSTDMEG GYAISAPPAS TLSFSFIGFS SKDVVVGNET TIDVVLSDDV
KALEEVVVIG YGAVKKKDVT GSVVSLQPKD FNKGVITAPD QLIQGRTPGV MVINNTGQPG
GATTVRIRGN SSIRAGNNPL FVLDGIPLSG SSARPGGSGG FGSDGGNPLA YLNPNDIASM
DILKDASATA IYGSRGANGV VIITTKRGAS GAPTVSFNAS TGVSSLLRKP EVLNADEFRQ
AVQFYAPNDL KGADFGGNVN AFDEITRVAP VQNYSMAITG GTDNGKYRVS AGYMDQKGII
ETSRLKKYTA SLNTSFKFLE SKKLGLDFNV LFTQTDENLA PIDVGVGFEG NVISQALTWN
PTRPLRVNSD SLTYVSPSTI NPLASLQAYK DIAVVNTTVA SIAPSYKITN DLEYKLVYSI
TRQTGTRKGR YIRGLIDPAQ IRNGFAFIGN NSETNQQLTH TLSYNKDIST DLNINAVAGY
EFLDYANSWN ALSGSGFTDV GLDFYDYLNY SVASNRGVNS FKSPTNQLQS LFLRVGLNYM
DKYLFTGTVR RDGSTKFGEN NKYANFPAVA LAWNVSNEAF LKGNSTLNNL KVRLGWGKTG
NREFDSGASR NRYIFDVQSV SQANFGNPDL RWESSETFNG GIDFGLFQSR IVGSIDVFRK
KTTDGLFERT LAQPAPSGKI WVNLDGEVIN KGVEIALTGT ILENKDFTWN LSANATYLKN
SVSGLPGFYE TAQLRGQGFS GVLGQRMVSG QPLNVWYLAK YAGLDPATGT SMYEGADGNA
STTVDPAQNK FYVNSPNPKY LLGVSTDVTY KKFSAVVNMN GAFGHYLFNN TFATVLGINN
LSTKNIAKEF FNTDIKEATS NSAAPSTRYL EKGDFMKMSN VTLSYRVGNI GKAFKNLNIS
LTGQNLFVLT GYKGFDPEVN TDGSSGGIPS LGIEYIPYPS ARTFLLGVNF SL
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