| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_4121 |
|---|
| Symbol | |
|---|
| ID | 8227719 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | - |
|---|
| Start bp | 4976661 |
|---|
| End bp | 4977692 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644931964 |
|---|
| Product | transcriptional regulator, LacI family |
|---|
| Protein accession | YP_003088489 |
|---|
| Protein GI | 255037868 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.944766 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGG TCTCTATCAC GATCAAAGAG ATTGCAAGGC AGCTCGGTAT TTCCAAATCC
ACCGTTTCGC GGGCCCTGCG CGACAGCAGC GAAATAAGTG AAGAAACCAA GCAAAAGGTG
ATAGACCTGG CCGAGCAGCT CAATTATTAC CCCAACCCGA TCGCGATCAG CCTTTTGAAG
AACCGCACGC AGACGATCGG CGTGATTGTG CCGGACATTG CCAATCGTTT TTATTCATCG
GCCATCGGCG GCGTGGAGGA TATTGCGTAC AGCCGCGGCT ATCACACGAT GATTTACCAA
AGCCACGAAC TGCTCGAAAG GGAGCGTTCC GCGACGCGCC ACATCGCATC CAGGCGGGTG
GACGGCCTGG TAGTGGCGAT TTCCAGCCAG TCGGAGAACA TCGATCACTT TGCCTCCTTG
CAGGAACAGG GCATTCCGGT GGTGTTTTTC GATCGAGTGA GCGACGCCAT GCAAACGCAC
AAGGTGCGGG TGGACGATTA TAAGGGCGCC TTCGATGCTA CCGAGCATTT GATCAAGCGG
GGCTGCCGGC GCATTGCGCA CATTGCCGGG CCGCGGCCGG TGTCGATCAC CCGGTTCCGT
TTAGAAGGTT ACAAGGATGC TTTAAGAAAA TACGGCATCG AGTTTCAGGA AGAATGGGTA
CTGCACAGCG AGATTACCCA AGCGGGCGGA ACCGAGCGGA CTTACCAGCT AATGGCCCTC
CGCGAGCGCC CCGACGCTAT TTTCGGCGCG AGCGACCGTA TTACCATGGG CATTCACTGG
GCCCTGCGCC AGCTGGGCTA CAAAATGCCC GACGACGTGG CCGTGGTGGG CTTCTGCGAC
CTGGCAATGT CGTCGCTTCT CGATCCGCCG GTGAGCTCCG TCACGCAGCC TTCATTTGAA
ATGGGACAGC AGGCTACTTC ATTGCTGCTG GACCTGATAG AAAGCAAAAA TACCCCGGCC
GAATTCGAGA CCAGGGTATT GCAATCTAAT TTGGTAATCA ACAAATCGTC GATGCGCGGG
GCTAACGGGT AA
|
|---|
| Protein sequence | MKKVSITIKE IARQLGISKS TVSRALRDSS EISEETKQKV IDLAEQLNYY PNPIAISLLK
NRTQTIGVIV PDIANRFYSS AIGGVEDIAY SRGYHTMIYQ SHELLERERS ATRHIASRRV
DGLVVAISSQ SENIDHFASL QEQGIPVVFF DRVSDAMQTH KVRVDDYKGA FDATEHLIKR
GCRRIAHIAG PRPVSITRFR LEGYKDALRK YGIEFQEEWV LHSEITQAGG TERTYQLMAL
RERPDAIFGA SDRITMGIHW ALRQLGYKMP DDVAVVGFCD LAMSSLLDPP VSSVTQPSFE
MGQQATSLLL DLIESKNTPA EFETRVLQSN LVINKSSMRG ANG
|
|---|
| |