Gene Dfer_4064 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_4064 
Symbol 
ID8227662 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp4911922 
End bp4913001 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content54% 
IMG OID644931907 
Productchorismate synthase 
Protein accessionYP_003088432 
Protein GI255037811 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0082] Chorismate synthase 
TIGRFAM ID[TIGR00033] chorismate synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000000659407 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000405427 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGGCAGTA CATACGGAAA GATATTCAAA ATAGCCACTT TCGGCGAATC GCACGGGGTA 
GGAATAGGCG TGGTGATCGA GGGCTGCCCG GCGGGTGTGA CTTTCGATTC AGATTTTATT
CAAAGCGAAC TCACGCGCAG GAAGCCCGGA CAGTCCCGGA TCACGACCCA ACGCAAGGAG
GCCGACGAAT TTGAAGTATT ATCGGGGGTT TTCGAAGGAA AAACGACCGG CACGCCCATT
GCGATGGTGA TCCGGAACGA AGACCAGCGG AGCAAGGATT ACTCGCACAT AGCGGCGCAA
TTCAGGCCTT CTCATGCCGA TTATACCTAT CAGGTCAAAT ACGGCGTGCG CGACTATCGT
GGCGGAGGGC GCAGTTCTGC ACGCGAAACG GCAGCACGCG TAGCCGCGGG AGCGCTCGCG
AAGCTGATGC TGGCCGAATT GGGGATCAGC ATCCAGGCTT ACGTATCACA GGTGGGCACT
ATGAAGCTGG AAAAAAGCTA CCAGGAACTG GACCTTTCCG AAACGGAAAA CAATGCAGTG
CGCTGCCCGG ACCCTGAAAT GGCCCAGCAA ATGTTCGATT ACATCGACGG CATCCGCAAG
CAAGGCGATT CGATCGGTGG TGTGGTGAAT TGTGTGGTAA AAGGAACGCC GGCCGGCTGG
GGTGAACCCG TGTTCGACAA ACTCCATGCG GAGCTCGGGA AAGCTATGCT AAGCATTAAT
GCCGTAAAGG GCTTTGAATA CGGCAGCGGT TTCGACGGCG TGCTGCTACC CGGCTCACAG
CACAATGACG CTTTCTATAC CGATGAAAAC GGCAATGTCC ACACGCGTAC CAACCATTCA
GGAGGCATTC AAGGGGGTAT TTCAAATGGA GAGGATATCT ATTTCCGCAC TGCTTTCAAA
CCGGTAGCAA CTATTATGCA AGACCAGGAG AGCGTCGATC AGTTCGGTAA CGTGGCCGTT
GTGCAAGGGA AAGGACGCCA TGATCCGTGC GTAGTGCCGC GCGCAGTGCC CATCGTAGAG
GCGATGACGG CATTGGTTCT GGCGGACTTT TATCTTAGAA ACAGATCCAG CAAGCTGTAA
 
Protein sequence
MGSTYGKIFK IATFGESHGV GIGVVIEGCP AGVTFDSDFI QSELTRRKPG QSRITTQRKE 
ADEFEVLSGV FEGKTTGTPI AMVIRNEDQR SKDYSHIAAQ FRPSHADYTY QVKYGVRDYR
GGGRSSARET AARVAAGALA KLMLAELGIS IQAYVSQVGT MKLEKSYQEL DLSETENNAV
RCPDPEMAQQ MFDYIDGIRK QGDSIGGVVN CVVKGTPAGW GEPVFDKLHA ELGKAMLSIN
AVKGFEYGSG FDGVLLPGSQ HNDAFYTDEN GNVHTRTNHS GGIQGGISNG EDIYFRTAFK
PVATIMQDQE SVDQFGNVAV VQGKGRHDPC VVPRAVPIVE AMTALVLADF YLRNRSSKL