Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_4061 |
Symbol | |
ID | 8227659 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | + |
Start bp | 4908356 |
End bp | 4910116 |
Gene Length | 1761 bp |
Protein Length | 586 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 644931904 |
Product | Tetratricopeptide TPR_2 repeat protein |
Protein accession | YP_003088429 |
Protein GI | 255037808 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000000018866 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000000049947 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAACAGAA ACATGAGAAT GAAATTAGTA GCATTGGTAA TTGGTTTATT AGCGTTTGTT AACTTACACG CACAGACGGT ACAGGATGGC TTGGCTTTAA TTCGTGGCGA ACGTTACACT GAGGCAGGAG ATTTGTTCAA GAAACTTGCC GAAGGAAGCC CTTCTGCTGA TAACCAATAT TACCTTGGTT ATTACTATAT CAAAACCGAC CAATTGGATG AGGCGCAGAA AGCATTCGAC AAAGGTCTGT CGCTGGACGA CAAGTCATAT CTGAACAAGG TAGGTCTTGG AACAATCGCC CTGGCGAAAG GTGACCGTGC AAAGGCGAAA GAGCTTTTCG ATGAAGCTGA AAAGAAGAAA AAGAAAGATG CCGAAGTTCT TTTCAGAATA GGCGAGGCTT ACACGCTGTT TGAGAAAAAC AATGATCCTG CCGAAGCGAT CCGTTTGCTT GACCTGGCAA TTGCCCGTGA TAAAAACCTG GCTGACGCTT ACCTTGCAAA GGGCGACGCG CTGATGCTGC GTAACGAAGG TGGTAACGCG GTTACAGCTT ACGAATACGC TTTGACAACG AAACCAAACT ACGCAGCTGC TCACAATGCA ATCGGTTCTA TTTACCTCCG TGGTAAAAAC TACAACCTTG CATTGGAGAA CTATAAGAAA GCGATCGAGG CTGATGCGAA CTTCGCACCT GCTTACAAAG ACCTGGCTGA ACTTTACTTC TGGGCTCAGA AATACAAGCA GGCTGCTGAA AACTTCGATC TTTACCTGCA AAAAAGCGGT AGCACCGATC CTAAAATGAA GCTCCGTGGT GCACAGTTTG CATTTACTGC TGACGACTAC GCGAAATCGC TCCAATTCCT GGAAGAAGCA AAAGGCAAAA TCAACGACCC TATCACCAAG CGTATGTATG GTTGGGCGTA TTTCAAAACC AACAAGCCTG ACGAAGCGAT CCAGAACCTG GAAGAATTCA TCAAAGTTGC TCCTGAGAAA GTAATCGGCG ACGACTACAA ATACCTCGGC CGTGCCCTGA ACGCTAAGTC AACCGACGGC AAAGGCTACG ATTCGTTGGG TATGGAGTAT ATCAAAAAAG GTGCTGAAAT GGATACCAGC AAAGCGGAAG CTGCTGCTGC TTACAAAGAA GTTGCCGGCT TGTACTACGC TGCCAAAGAT TTCCCTAAGG CTGCTGCTGC TTACGAAAAA GGTAACGATC TGGATACAGC AAAAGCAAGC GCTAACGATT ACTACTACGA AGGTCTTGCT AACTTTCAGA GCGCACAAGC TATGGTCGTT CCAACGTCGG CAGATTCTAA CTTTGCTGAC AGCTCGAAAA TTGCAATCGA CAAGCGCAAC CTGTACCTGA AGGCGGATTC AATCTTCGCT ACCGTAACGC AGAAACTGCC TGAATGGCCT TACGGTTACT ACTGGCGTGC AAGTACGCTT TACAATGCGT ACGACAGACA AGAGAATGTT GATAAGGGTA TTTCGCAACC ATACTACCTG AAATTGACGG AACTTGCTGA AAAAGACCCA GATCCTAGCA AATACAAGTC GTATCTCCGA TTGGCTTACG GTTACCTGGC ATTCCACGCA CAGTCGACGT TGAAAGACGA AGCGAAAGCG AAGGAGTATT GGGAGAAACT ACTGAAAGTA GATCCGGACA ATGCGGCTGC AAAAGAAGCA TTGGGACTCG CAGTTGCCCA GCCGGCAGCG CAACCAGCAG CAGCTGGTAC TGCGGCTAAG CCTGCTCCAA AGAAGAAGTA A
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Protein sequence | MNRNMRMKLV ALVIGLLAFV NLHAQTVQDG LALIRGERYT EAGDLFKKLA EGSPSADNQY YLGYYYIKTD QLDEAQKAFD KGLSLDDKSY LNKVGLGTIA LAKGDRAKAK ELFDEAEKKK KKDAEVLFRI GEAYTLFEKN NDPAEAIRLL DLAIARDKNL ADAYLAKGDA LMLRNEGGNA VTAYEYALTT KPNYAAAHNA IGSIYLRGKN YNLALENYKK AIEADANFAP AYKDLAELYF WAQKYKQAAE NFDLYLQKSG STDPKMKLRG AQFAFTADDY AKSLQFLEEA KGKINDPITK RMYGWAYFKT NKPDEAIQNL EEFIKVAPEK VIGDDYKYLG RALNAKSTDG KGYDSLGMEY IKKGAEMDTS KAEAAAAYKE VAGLYYAAKD FPKAAAAYEK GNDLDTAKAS ANDYYYEGLA NFQSAQAMVV PTSADSNFAD SSKIAIDKRN LYLKADSIFA TVTQKLPEWP YGYYWRASTL YNAYDRQENV DKGISQPYYL KLTELAEKDP DPSKYKSYLR LAYGYLAFHA QSTLKDEAKA KEYWEKLLKV DPDNAAAKEA LGLAVAQPAA QPAAAGTAAK PAPKKK
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